Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0110 ATGGCTGCTACTGGACCTTCCTTCCTCCTCCTCCTATTATTCCTTACTACTACATATCAAGCAGCGGAGAGCAGGGAAACGCCATCCCCAACTCCCAATGCTAGTAGCGTCGTCATTGCTCCACCGCCGCCGCCGCCGCCGCCGCCGTCGTTCAGACCAGGCATAGCGGTGGTGGTGTGCGTTTTGACCACCATAATCTCCCTCACCTCCCTCCTCCTCCTCTACATCAAACACTGCAACAACGGCATCACCGACGGCGGCGGTGGCGGAGGGACTTCCACTCCGTGGACGGTGGCGCCTTTCTCCGGCAGGAAGAACTCCGGCATTGACCGCTCCGTGGTGGAATTGTTGCCCGTGTTCAGATTCGGAGCGCTGCGGGGGCAGAAGGAAGGGTTGGACTGCGCGGTGTGCCTCAACAAGTTCGAGGCCGCGGAGGTCCTGAGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTGGAGTGCGTTGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTGTGTCGGTACCGCGTGGATCCGGAGGACATTCTTCTGGTCGAGGACGCAAGGCCTTTCCGGCAATCTCATTGTCAAAAACGGAGCAGCAACAACAACGAAGAACAGGAAGGCGTGCGTTTGAATTTGGAGCTGGAGATTGCGGAGTCTCGACGGAGGCATTCGTCGGTTGGGGAAAGAGAAACAGCGGAGGAGCAGCAGAGTCGGAGGTGGACGGCGTCGTTTCGAAGGTCATTGGATAGCGCCGCACCGAAAAAGAAGAACGAGAGCGTTGGAACTGGAGTTGGGTGTTTTGTGCGTACCAGAAAAGACGGGATGTTGTTGACGCAAGACACGGGGAAAGAGAAAGAGCGAGATAGGACAAGCGTGGAACGGAGGTTGGAACACCGGATTATTGTTTCCCCGGGCCCAGGCACAGGGAAGTGTAGGGTCCAGCAGCGGTGGAGCGACGTGCAGGCTGCTGACCTGCTGTATCTGACGTCGGAGATGATAATTAGCGAGGCGCAGTGGAACACGCGCCGGGGTAGGGGAAGGCGCCGTACTAATGATGAGGTAGAGGACAGTTGGAATGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCGACAGAGAGTCAGAGTATGGAGAGAGAAAGGAGGGACTAATGAAGAGGTGGTTGGGTTGGATATCAAAGTCACGCCACACAACAACAGCAGAACCAGCTGTACGGTAG 1254 0.5686 MAATGPSFLLLLLFLTTTYQAAESRETPSPTPNASSVVIAPPPPPPPPPSFRPGIAVVVCVLTTIISLTSLLLLYIKHCNNGITDGGGGGGTSTPWTVAPFSGRKNSGIDRSVVELLPVFRFGALRGQKEGLDCAVCLNKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDARPFRQSHCQKRSSNNNEEQEGVRLNLELEIAESRRRHSSVGERETAEEQQSRRWTASFRRSLDSAAPKKKNESVGTGVGCFVRTRKDGMLLTQDTGKEKERDRTSVERRLEHRIIVSPGPGTGKCRVQQRWSDVQAADLLYLTSEMIISEAQWNTRRGRGRRRTNDEVEDSWNGRGIINSRSVSEITGLSRFDRESEYGERKEGLMKRWLGWISKSRHTTTAEPAVR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0110 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 183 IPR013083 -
Aed10g0110 417 PANTHER RING-H2 FINGER PROTEIN ATL43 16 409 - -
Aed10g0110 417 CDD RING-H2_EL5_like 133 176 - -
Aed10g0110 417 SMART ring_2 134 175 IPR001841 -
Aed10g0110 417 Pfam Ring finger domain 133 176 IPR001841 -
Aed10g0110 417 SUPERFAMILY RING/U-box 129 181 - -
Aed10g0110 417 Coils Coil 204 226 - -
Aed10g0110 417 MobiDBLite consensus disorder prediction 225 265 - -
Aed10g0110 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 409 - -
Aed10g0110 417 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Aed10g0110 417 MobiDBLite consensus disorder prediction 23 45 - -
Aed10g0110 417 MobiDBLite consensus disorder prediction 225 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0110 Aed-Chr10 849384 850637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0110 50 402 C3H Transcription Factor Family AT5G05810 47.644 4.62e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0110 K19041 - gmx:100794083 457.603