Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0109 ATGCAGATCTCATTCATGAAAATAAAGAAAAAGAACAGTGATGATGAAGAAAAATCGAAAAGGACAAAGGATCCGAAAGTAATGTTTGTCATGAAGCAAACTCCGAAGAGCGCAAAGCCTAAGCAAAAGATGAAGTTCAGTATTCGCTTCCTGTTCTTGATGCTGCAATTCCTCGTCGTTCTGGGCTGTGCTACTAATCCAGCCATTGCTTATCTCATTTTTATTTGTTCTGCCCAGGTTATAATGGATAATGGCATAGTTCAAGTTAACTTATCAAATCCTGAAGGAATTGTGACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGACGAATCTAACAGAGGGTACTGGGATATTGTATGGGATGAAGGCGGAAAAAAAAGAACTAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCGCGAATTTTACGGTGATAGTAGAAAATGAGGAACAAGTAGAGTTATCTTTCAGCAGAGAATGGAATGCCTCTCTTGAGGGGAAGCTTCCGCCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGATTTTACACCTATGCCATTTACGAGCATTTAAAAGAATGGCCAGCTTTTGATCTTGACAATACTAGGATCGCATTCAAGCCTAGGAAAGACAAGTTCCATTACATGGTTGTAGCGGACAACAGACAAAGATTTATGCCTCTGCCTGATGACCGGTCACCCCCGAGAGGTCAAGTTCTGGCCTACCCTGAGGCTGTGCGCCTTGTTGACCCCATCGAACCTCAATTCGAAGGAGAGGTAGATGACAAATACCAGTACGCGTGTGAGAGCCGAAACAAGCGTGTTCACGGTTGGATGTGCATTGATCCAATGAATTCCACTGGATTCTGGCTAATTACGCCAAGCTATGAGTTTCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCACGTTGGTCCTACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGGTGGATCTGATAATGCAATTTGGGCCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTTATATACCTTAATTCTCTATCTAACGGGTTTAGCCCAATCAACCTCTGGGAGGACGCCAAACAACAGATGGTGAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCCGAGGACTTTCTCTCATCTGAGCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTTAGCGGTGCTTATGTGGGACTAGCAGCTATAGGAGAGGTTGGATCTTGGCAAAGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGACAAAGGCTATTTCTCAATTATTAACATACGCCCTGGGGACTATAATCTCTATTCCTGGGTCAATGGATTCATTGGGGATTATCAATTCGATAGCGTCATCAACGTAACGGCAGGTTGTGAAATAAATGTGGGTGAGGTTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGGATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCATTGTATAGGCAATATGGGTTGTGGGAGAGGTATGCCGAATTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAAGACAATGGCACTTACATAGGAACCACATGGCAAATTAATTTCAAGCTTGGTAGTGTGAATACCAACGGAACCTACACATTGCGGGTTGCTTTGGCTTCTGTGCACTCTGCTGAATTAGAGATTCGGATAAACAATTTAGAAGCAAGTCCAGCTTTATTTTCAACTGGGGTGATTGGAAAGGAGAACACTATAGCTAGACATGGAATTCATGGTCTCTACTGGCTATTCAGCATTGATGTAGAAGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACGCAAACAAGAGACACTGGTCCTTTTATAGGAGTTATGTATGACTATATTCGTTTAGAATACAAACGGTGA 2091 0.4266 MQISFMKIKKKNSDDEEKSKRTKDPKVMFVMKQTPKSAKPKQKMKFSIRFLFLMLQFLVVLGCATNPAIAYLIFICSAQVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEAANFTVIVENEEQVELSFSREWNASLEGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMVVADNRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPIEPQFEGEVDDKYQYACESRNKRVHGWMCIDPMNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGVDLIMQFGPNEPWKKVYGPIFIYLNSLSNGFSPINLWEDAKQQMVNEVESWPYTFPASEDFLSSEQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIRPGDYNLYSWVNGFIGDYQFDSVINVTAGCEINVGEVVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYRQYGLWERYAELYPNEDLVYTVGISDYRKDWFFAQVNRKKDNGTYIGTTWQINFKLGSVNTNGTYTLRVALASVHSAELEIRINNLEASPALFSTGVIGKENTIARHGIHGLYWLFSIDVEGTLLVQGNNTIFLTQTRDTGPFIGVMYDYIRLEYKR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0109 696 Pfam Polysaccharide lyase family 4, domain III 516 692 IPR029411 -
Aed10g0109 696 CDD RGL4_N 77 367 - -
Aed10g0109 696 MobiDBLite consensus disorder prediction 1 25 - -
Aed10g0109 696 Pfam Rhamnogalacturonate lyase family 77 274 IPR010325 -
Aed10g0109 696 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 696 - -
Aed10g0109 696 Gene3D - 514 693 - -
Aed10g0109 696 CDD RGL4_M 407 504 IPR029413 -
Aed10g0109 696 CDD RGL4_C 518 693 - -
Aed10g0109 696 Pfam Polysaccharide lyase family 4, domain II 430 502 IPR029413 -
Aed10g0109 696 MobiDBLite consensus disorder prediction 8 25 - -
Aed10g0109 696 SUPERFAMILY Starch-binding domain-like 406 504 IPR013784 GO:0030246
Aed10g0109 696 Gene3D - 404 504 - -
Aed10g0109 696 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 696 - -
Aed10g0109 696 SUPERFAMILY Galactose-binding domain-like 513 694 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0109 Aed-Chr10 842752 847373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0109 79 693 Polysaccharide Lyase AT1G09890 64.331 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0109 K18195 - gmx:100786488 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0109 10 842752 847373 Aed10g0109 10 842752 847373 ECH