Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed10g0109 | ATGCAGATCTCATTCATGAAAATAAAGAAAAAGAACAGTGATGATGAAGAAAAATCGAAAAGGACAAAGGATCCGAAAGTAATGTTTGTCATGAAGCAAACTCCGAAGAGCGCAAAGCCTAAGCAAAAGATGAAGTTCAGTATTCGCTTCCTGTTCTTGATGCTGCAATTCCTCGTCGTTCTGGGCTGTGCTACTAATCCAGCCATTGCTTATCTCATTTTTATTTGTTCTGCCCAGGTTATAATGGATAATGGCATAGTTCAAGTTAACTTATCAAATCCTGAAGGAATTGTGACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGACGAATCTAACAGAGGGTACTGGGATATTGTATGGGATGAAGGCGGAAAAAAAAGAACTAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCGCGAATTTTACGGTGATAGTAGAAAATGAGGAACAAGTAGAGTTATCTTTCAGCAGAGAATGGAATGCCTCTCTTGAGGGGAAGCTTCCGCCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGATTTTACACCTATGCCATTTACGAGCATTTAAAAGAATGGCCAGCTTTTGATCTTGACAATACTAGGATCGCATTCAAGCCTAGGAAAGACAAGTTCCATTACATGGTTGTAGCGGACAACAGACAAAGATTTATGCCTCTGCCTGATGACCGGTCACCCCCGAGAGGTCAAGTTCTGGCCTACCCTGAGGCTGTGCGCCTTGTTGACCCCATCGAACCTCAATTCGAAGGAGAGGTAGATGACAAATACCAGTACGCGTGTGAGAGCCGAAACAAGCGTGTTCACGGTTGGATGTGCATTGATCCAATGAATTCCACTGGATTCTGGCTAATTACGCCAAGCTATGAGTTTCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCACGTTGGTCCTACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGGTGGATCTGATAATGCAATTTGGGCCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTTATATACCTTAATTCTCTATCTAACGGGTTTAGCCCAATCAACCTCTGGGAGGACGCCAAACAACAGATGGTGAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCCGAGGACTTTCTCTCATCTGAGCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTTAGCGGTGCTTATGTGGGACTAGCAGCTATAGGAGAGGTTGGATCTTGGCAAAGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGACAAAGGCTATTTCTCAATTATTAACATACGCCCTGGGGACTATAATCTCTATTCCTGGGTCAATGGATTCATTGGGGATTATCAATTCGATAGCGTCATCAACGTAACGGCAGGTTGTGAAATAAATGTGGGTGAGGTTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGGATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCATTGTATAGGCAATATGGGTTGTGGGAGAGGTATGCCGAATTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAAGACAATGGCACTTACATAGGAACCACATGGCAAATTAATTTCAAGCTTGGTAGTGTGAATACCAACGGAACCTACACATTGCGGGTTGCTTTGGCTTCTGTGCACTCTGCTGAATTAGAGATTCGGATAAACAATTTAGAAGCAAGTCCAGCTTTATTTTCAACTGGGGTGATTGGAAAGGAGAACACTATAGCTAGACATGGAATTCATGGTCTCTACTGGCTATTCAGCATTGATGTAGAAGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACGCAAACAAGAGACACTGGTCCTTTTATAGGAGTTATGTATGACTATATTCGTTTAGAATACAAACGGTGA | 2091 | 0.4266 | MQISFMKIKKKNSDDEEKSKRTKDPKVMFVMKQTPKSAKPKQKMKFSIRFLFLMLQFLVVLGCATNPAIAYLIFICSAQVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEAANFTVIVENEEQVELSFSREWNASLEGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMVVADNRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPIEPQFEGEVDDKYQYACESRNKRVHGWMCIDPMNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGVDLIMQFGPNEPWKKVYGPIFIYLNSLSNGFSPINLWEDAKQQMVNEVESWPYTFPASEDFLSSEQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIRPGDYNLYSWVNGFIGDYQFDSVINVTAGCEINVGEVVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYRQYGLWERYAELYPNEDLVYTVGISDYRKDWFFAQVNRKKDNGTYIGTTWQINFKLGSVNTNGTYTLRVALASVHSAELEIRINNLEASPALFSTGVIGKENTIARHGIHGLYWLFSIDVEGTLLVQGNNTIFLTQTRDTGPFIGVMYDYIRLEYKR | 696 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed10g0109 | 696 | Pfam | Polysaccharide lyase family 4, domain III | 516 | 692 | IPR029411 | - | |
Aed10g0109 | 696 | CDD | RGL4_N | 77 | 367 | - | - | |
Aed10g0109 | 696 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Aed10g0109 | 696 | Pfam | Rhamnogalacturonate lyase family | 77 | 274 | IPR010325 | - | |
Aed10g0109 | 696 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 696 | - | - | |
Aed10g0109 | 696 | Gene3D | - | 514 | 693 | - | - | |
Aed10g0109 | 696 | CDD | RGL4_M | 407 | 504 | IPR029413 | - | |
Aed10g0109 | 696 | CDD | RGL4_C | 518 | 693 | - | - | |
Aed10g0109 | 696 | Pfam | Polysaccharide lyase family 4, domain II | 430 | 502 | IPR029413 | - | |
Aed10g0109 | 696 | MobiDBLite | consensus disorder prediction | 8 | 25 | - | - | |
Aed10g0109 | 696 | SUPERFAMILY | Starch-binding domain-like | 406 | 504 | IPR013784 | GO:0030246 | |
Aed10g0109 | 696 | Gene3D | - | 404 | 504 | - | - | |
Aed10g0109 | 696 | PANTHER | RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN | 1 | 696 | - | - | |
Aed10g0109 | 696 | SUPERFAMILY | Galactose-binding domain-like | 513 | 694 | IPR008979 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed10g0109 | Aed-Chr10 | 842752 | 847373 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed10g0109 | 79 | 693 | Polysaccharide Lyase | AT1G09890 | 64.331 | 0.0 | 843 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed10g0109 | K18195 | - | gmx:100786488 | 1275.38 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aed10g0109 | 10 | 842752 | 847373 | Aed10g0109 | 10 | 842752 | 847373 | ECH |