Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0108 ATGCCATCTCTGGGGCCTAATGAAGTAATGAAAAATCATGTGCAGGTGATGATGGAAAATGGCATACTAAAAGTAACCTTATCAAATCCTGAGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTGCAGGAACAAGTGGTACATTTGATGTCATCAAGGGAACAAGTTTCAAAGTTATGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCTCCAGGACGTGGGACGTCTCTCTCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGATTCGTAATGCTTCGTGGTTCTTCGGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGACTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTATATGGCAATGGCAGATAATAGACAGAGAAACATGCCTCTTCCAGATGATCGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTTGTCAATCCCATTGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCCGCAGTAGGATTCTGGCTAATTACGCCTAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGACCTACAACTCTTGCTGTGTTTCTGAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATGCTGGAGAGCCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTACTTGAATTCTCCGTATGATGGAAGTGACCCTCTTAAGCTATGGGAAGACGCTAAACTACAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCCAAGTGGGACGACCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAAAGAGAGGTATATAGACGATGACTATATATCAGCAAAGAGTGCCTATGTTGGCTTGGCTCCACCAGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCTCCATCAGCAATATACGTGCTGGAGACTACAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTACAAATATGACGTAGTTATGAACATAACAGAAGGTTGTGAAGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGCCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAATTCTATGTTCCTGATCCCAATCCCAAATATATCAACAAACTCTACGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAAAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAATTGGTGTTGGTGACTACACCAAAGATTGGTTTTTTGCTCAAGTTAACAGGAAGAAAAATGATAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAACGTGAACAAAAGCAGTAGCTATAAACTGCGAGTGGCTTTGGCATCGGCAACATTATCTGAACTTCAGGTTAGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCACGGACTTTATTGGCTTTACAGTGTAGAAATAGTTGGAACTCAACTAATTGAAGGAGATAATACCATATTTTTGACACAGGCCAGAGGCAATAGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTCGAAGGTCCACCTTCATCGTCTAGCTTCAATAAGAAAATTTGA 1941 0.4199 MPSLGPNEVMKNHVQVMMENGILKVTLSNPEGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSAGTSGTFDVIKGTSFKVMVENEDQVELSFSRTWDVSLEGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNAGEPWKKVFGPVFIYLNSPYDGSDPLKLWEDAKLQMLVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVKERYIDDDYISAKSAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVMNITEGCEDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVGDYTKDWFFAQVNRKKNDNTYQGTTWQIKFKLDNVNKSSSYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYSVEIVGTQLIEGDNTIFLTQARGNSPFQAIMYDYIRFEGPPSSSSFNKKI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0108 646 Pfam Polysaccharide lyase family 4, domain III 445 632 IPR029411 -
Aed10g0108 646 SUPERFAMILY Starch-binding domain-like 374 420 IPR013784 GO:0030246
Aed10g0108 646 Pfam Rhamnogalacturonate lyase family 12 204 IPR010325 -
Aed10g0108 646 Gene3D - 8 304 IPR014718 GO:0030246
Aed10g0108 646 CDD RGL4_M 335 435 IPR029413 -
Aed10g0108 646 Gene3D - 443 634 - -
Aed10g0108 646 SUPERFAMILY Galactose mutarotase-like 20 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aed10g0108 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 639 - -
Aed10g0108 646 SUPERFAMILY Galactose-binding domain-like 442 634 IPR008979 -
Aed10g0108 646 CDD RGL4_N 15 305 - -
Aed10g0108 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 639 - -
Aed10g0108 646 Pfam Polysaccharide lyase family 4, domain II 358 428 IPR029413 -
Aed10g0108 646 CDD RGL4_C 447 634 - -
Aed10g0108 646 Gene3D - 334 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0108 Aed-Chr10 825215 829126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0108 15 636 Polysaccharide Lyase AT1G09890 72.276 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0108 K18195 - gmx:100793563 1259.59