Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0107 GGTTTTGTGGGACGAGGAAACGAGGTTACTTATCCGATACCTGTTGGTTCTCATCTGGTCCTAGGACGAGCTTTTCTTGGACTTTCTTGTTTCTACGCCATGGCAGCCGTGTCCGATCAAGACACCAGTGTATGCACTCACTGTGATCGGGCTATTCCTTTGGCAAATATTGATTTGCATTTCGCTCATTGCTCTCGAAACCTTGAAAGATGCAAGATTTGTCACGACATGATTCCGAAACTACATGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACTATGGAACGTGATATTTTAGATATCCATAGAGATGAAAATTGTCCTAGAAGGATGGTCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCAACTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTACGTGAACGATACAATCATGAAGATAGTTGCAATAGAATTCAAGACAATTCTGCAGGGTCTTCAAGGTACGTGAGGCCAACTGAAAGAGATGAGGGTGCTCGAAGAAGGCCGCCGCCTAATGATTTCTCAAGAAAACATCTTTTTTTCACAATAGCAATCACTGATTCCTTCTGTTATCTGCAATCCAGCCAAAAGAAAAAACAAGGGTTCACCATGTCCGGCCCCCCAGGGGTACAGTTGCACATCCAAGATCACCATGTGGTGATGGATAATGGCTTAGTCCAAGTTACGTTGTCAAACCCTGATGGAATTGTCACCGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAGCATAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATGTTTGATGTGATTAAAGGGTCGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGATTTCATTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATATTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATATTGGTGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAACAGGCAAAGGGTTATGCCTTTTCCTGAAGACCGGTTACCAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTGCTAATCAATCCCAAGGATCCACGATTGAAAGGAGAGGTGGATGACAAGTATCAATATTCAAGTGTAAACATGGATAATCGAGTCCATGGGTGGATATCTTTTAATCCGCCAGTAGGATTCTGGAAGATCACACCTAGTGATGAGTTTCGTTCTGGAGGACCCCTCAAACAGAATTTGACCTCGCACGTAGGCCCCACCACGCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATTTGGTGCCTAAATTTAGGGGTGGTGAACCATGGAAGAAGGTTTTTGGGCCTGTATATATTTATCTTAATTCTTCTGGAGCAGTTGGTGACGACCCTCTTTGGCTATGGGAGGATGCAAAAATACAGGTTTGTTCATGTATCTCTTGTACCTTGGTTAGGAGGTACGTCTGCACAGACTTAATATCAGCAAATGCTGCTTATGTTGGTTTAGCTCCACCTGGAGATGCAGGTTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTCACTATTAGAAATGTACGTCCAGGCAACTATAACCTTTTTGCTTGGGTACCTGGTTTTGTTGGGGACTACAAATTTGGTGATTTTATGAAGATAACATCAGGTTCTAACATTGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCAGCTGCACAATTTTATGCTCCTGATCCCAATCCACTACATATTAATAAGATTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTACACAGAATTGTATCCTGAAGAAGATTTGGTTTACACAATCGGAGTTAGTGACTATAGGAAGGATTGGTTTTATGCACAGGTTCCGAGGAAAAAAGAGGATAACAGTCTTCAAGGAACAACTTGGCAAATCAAGTTCGAAATCAGTAGTGTGGTTAAAGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCCAATGCTAAGCGACCCCTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCAAGGAATCTATTGGCTGTACCATGTGAATATACCAGGTTCTGTTCTTATTGATGGCACAAATACCATGTATTTCACGCAACCAAGATGCACCTGTTCCTTCCAAGGTATCATGTATGATTATATTCGTTTGGAAGGCCCACCTTGTGAAGAAAATTAA 2532 0.4234 GFVGRGNEVTYPIPVGSHLVLGRAFLGLSCFYAMAAVSDQDTSVCTHCDRAIPLANIDLHFAHCSRNLERCKICHDMIPKLHAEEHYLNTHAPVACSLCSETMERDILDIHRDENCPRRMVTCEFCEFPLPATDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNRIQDNSAGSSRYVRPTERDEGARRRPPPNDFSRKHLFFTIAITDSFCYLQSSQKKKQGFTMSGPPGVQLHIQDHHVVMDNGLVQVTLSNPDGIVTGIRYNGVDNLLEVLNKEHNRGYWDLVWSAPGSKGMFDVIKGSCFKVIVQNEEQVEISFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLNGWPDFDIGETRITFKLRKDKFQYMAMADNRQRVMPFPEDRLPGRCQTLGYPEAVLLINPKDPRLKGEVDDKYQYSSVNMDNRVHGWISFNPPVGFWKITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSSGAVGDDPLWLWEDAKIQVCSCISCTLVRRYVCTDLISANAAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGNYNLFAWVPGFVGDYKFGDFMKITSGSNIELGELVYEPPRDGPTLWEIGIPDRSAAQFYAPDPNPLHINKIFINHPDRFRQYGLWDRYTELYPEEDLVYTIGVSDYRKDWFYAQVPRKKEDNSLQGTTWQIKFEISSVVKGSTYKLRVAIASATLAELQIRVNDPNAKRPLFTSGLIGRDNSIARHGIQGIYWLYHVNIPGSVLIDGTNTMYFTQPRCTCSFQGIMYDYIRLEGPPCEEN 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0107 843 SUPERFAMILY Starch-binding domain-like 580 618 IPR013784 GO:0030246
Aed10g0107 843 SUPERFAMILY Galactose mutarotase-like 243 525 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aed10g0107 843 CDD RGL4_C 649 836 - -
Aed10g0107 843 CDD RGL4_N 244 528 - -
Aed10g0107 843 Pfam Polysaccharide lyase family 4, domain II 562 633 IPR029413 -
Aed10g0107 843 ProSiteProfiles Zinc finger TRAF-type profile. 82 126 IPR001293 GO:0008270
Aed10g0107 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 145 IPR013083 -
Aed10g0107 843 Gene3D - 560 631 - -
Aed10g0107 843 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 549 841 - -
Aed10g0107 843 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 223 542 - -
Aed10g0107 843 CDD RGL4_M 555 637 IPR029413 -
Aed10g0107 843 Pfam Polysaccharide lyase family 4, domain III 647 835 IPR029411 -
Aed10g0107 843 Pfam Rhamnogalacturonate lyase family 236 430 IPR010325 -
Aed10g0107 843 Gene3D - 645 836 - -
Aed10g0107 843 SUPERFAMILY Galactose-binding domain-like 644 836 IPR008979 -
Aed10g0107 843 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 549 841 - -
Aed10g0107 843 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 223 542 - -
Aed10g0107 843 Gene3D - 236 536 IPR014718 GO:0030246
Aed10g0107 843 MobiDBLite consensus disorder prediction 173 199 - -
Aed10g0107 843 MobiDBLite consensus disorder prediction 182 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0107 Aed-Chr10 813990 825187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0107 235 840 Polysaccharide Lyase AT1G09910 67.302 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0107 K18195 - gmx:100814185 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0107 10 813990 825187 Aed10g0107 10 813990 825187 ECH