Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0099 ATGGAGTTCTATGACCATGATTTCTTGGAGGAATTAATGACTCTAAGAAGAGAAACGAGCACAGAAGAAAACCAGTTCTTCTCTAATGGTTGGAGTTTTGACTCTAGTTTTGATCAAAACTCTTTACCTAATTACCTCCCAAACTCTTCTCGTGGTCAAGAAGTTCCTCAAAGTTACAACAACAATGACTACCCCTTCAATGAAATTTATGGCTCCTTACTTGATGAATCCTCACCACAGATAATCGATTCATACTATAGCACTCTTGATAGTACTCCACTCAATACCCCTCCATTATTTCTTGGTCAAGAAGATTATCCATTTTCCATGATAATGGACGAAGAGGACCCGGGTTTGCTTGGGGAAGGGCTTAAGAATTTGGAGCTGCAAAACACATGCAAAGTGGAGCCAACACAATCCTCTGAAATGCAAGTTTTCAACATGGGAACGGGTCTTGAAAGAAAGAATGTTCGATCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGAAAGAGGTTGAACGATCGGCTCTCAATGCTAAGAGCAATTGTCCCCAAGATTAGTAAGATGGATAGAACATCTATACTTGGAGATACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTGCAACAGGAAGTAGAAGTAGAAGTAGATTCAAACATTGCAGGCATTTTCAAAGATGTAAAGCCAAATGAAATCCTAGTGCGAAATTCACCCAAGTTTGAGGTGGAGAGGGGTGTGGACACCCGGGTGGAAATTTGCTGTGCAGGGAAGCCAGGCTTGTTACTATCTACAGTAAACACCTTGGAAGCATTAGGCCTAGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGCAAAAGACAATGCTGAGTTCTGAAGAAATAAAGCAAGCGTTGTTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 1005 0.409 MEFYDHDFLEELMTLRRETSTEENQFFSNGWSFDSSFDQNSLPNYLPNSSRGQEVPQSYNNNDYPFNEIYGSLLDESSPQIIDSYYSTLDSTPLNTPPLFLGQEDYPFSMIMDEEDPGLLGEGLKNLELQNTCKVEPTQSSEMQVFNMGTGLERKNVRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEVEVEVDSNIAGIFKDVKPNEILVRNSPKFEVERGVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEQKTMLSSEEIKQALFRSAGYGGRCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0099 334 CDD ACT_UUR-ACR-like 260 301 - -
Aed10g0099 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Aed10g0099 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 334 - -
Aed10g0099 334 Coils Coil 203 230 - -
Aed10g0099 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
Aed10g0099 334 PANTHER DNA BINDING PROTEIN 3 334 - -
Aed10g0099 334 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Aed10g0099 334 Gene3D - 155 228 IPR036638 GO:0046983
Aed10g0099 334 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0099 Aed-Chr10 774230 775549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0099 11 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 47.198 7.41e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g0099 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0099 - - gmx:100812578 564.303