Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0097 ATGACTCCGCCAGTGCTGAGCATAGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGTCTCAAGAGCTTAGAATTTAAAGAACGCAACTACATGGGATTATCTGATTGTTCTTCTGTGGACAGCTCCGTTCCGTCCTTCTCGGAAGAGAGCAGAAGTAATCTGAATCTGAAAGCCACTGAACTCAGGCTCGGCCTTCCAGGATCACAGTCTCCTGAAAGAGATTCTGATCTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAGCCTTTGTTTCCGTTGCGTCCTTTGACTGATGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAACAAAAGAGGCTTCTCAGATGCCATGAACAGCTTCTTGGAGTCGGAGGGGAAATTCCTAGTTGATTCGGAGGCCGCCAATCCGATACTATCTCCCAGGCCTGCTTCTAACTTGGGATTGAAACCTGGTTCTACACTTGAGAATGTTGGGGCTCAGCCTCAGCAAACCAAAATGAAAGAAGTAGCAACAACAAAGGCAAATGAAACCATTGATGGTTCTGCAAATAATAATAGCAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAAAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGGAAAAGTGGGGGTTGGTGCACTGTTCATCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTTGAAAAGATGTTCAGCTGTTTTACTATAAGACAATTTGGATCTCATGGAATTCTGGGCAGGGAGATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGATGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGACCTAG 1086 0.4383 MTPPVLSIGEEEGKSNVTLLVSSSTTMESVCLKSLEFKERNYMGLSDCSSVDSSVPSFSEESRSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPLTDDHHSSTKTAVLGNKRGFSDAMNSFLESEGKFLVDSEAANPILSPRPASNLGLKPGSTLENVGAQPQQTKMKEVATTKANETIDGSANNNSSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDGKVGVGALFIKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTIRQFGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRMRIMKSSDAIGLAPRAVEKSKSRT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0097 361 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 355 IPR003311 GO:0005634|GO:0006355
Aed10g0097 361 ProSiteProfiles PB1 domain profile. 241 343 IPR000270 GO:0005515
Aed10g0097 361 PANTHER AUXIN-INDUCED PROTEIN 23 355 - -
Aed10g0097 361 SUPERFAMILY CAD & PB1 domains 241 342 - -
Aed10g0097 361 Pfam AUX/IAA family 71 352 IPR033389 -
Aed10g0097 361 MobiDBLite consensus disorder prediction 154 178 - -
Aed10g0097 361 Gene3D - 236 355 - -
Aed10g0097 361 MobiDBLite consensus disorder prediction 163 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0097 Aed-Chr10 756345 759694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0097 244 346 B3 DNA Binding Superfamily AT2G46530 33.981 6.11e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aed10g0097 AUX_IAA 4e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0097 K14484 - gmx:100783314 608.986