Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0096 ATGGGTACTGGTTGGAGAAGAGCCTTCTGCACCCGCGACCCTGCTTCTACTATATCGGATAAACAGCCCGGAAGCCCAAGCCCGAGCCCGAGCCCAAGAAGCTGTGCCAGATTGGGTTTTCTCTCCGGCGGGGGTAGCAACCCTTCCACCCCACGCTTGCGTTGCACAACAGTACCGGAAACTGCTTCTCGAAATGAGAGTCCCAGAGTTCAAAGCAAGAACACCCCCAGAGCAACGCTATCAGTCTCAAATCCAACTTCTCCGCGCTCCCCTCTCAAGCTCTCCCTCTTCAAGAACAGCTTCAAGTTCAGGCAGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCGATATACACAGCGGAATGTGGTCACGCGTTTCATTTCCCGTGCATCGCAGCGCATGTACGCAAGCATGGAAGCCTGGTTTGCCCTGTTTGCAACGCCACGTGGAAAGACGTGCCCCTGCTCGCGGCTCACAAGAACCTCGCGCCACAATCCGCCACGCAAAACGACGTCGTCGCCGTCCCCAATGCCAGCAGCAATAAAAAGCCAACAGAGAACTCCTCCCCCGTTTTCAAAGCCTACAACAACCACGTGGAGCCACCACAGCCTAAGCATTCCGATTCACTCAGGTCCTACGACGATGACGAGCCACTCCTCTCTCCCGCCTCCGGCGGCCGGATTATTCCCATTCCCGAAGTCGACGAGAATGCAGAAGACGACGAGGATGAAGACGCTGGCGAGTTCCAGGGCTTTTTCGTCAATCCAAAGAATTCATCCTCGTCGAAATACTACTCCGATTCGTTGCTAACAAGTGAAAGAGATTCCAGAACCGTTCAGGTGAAACTGATGCCGGAGTGTGCTGTTATCTCAGCAACCAGAACGCACGAGACCTACGCGTTAGTCTTAAAAGTGAAGGCTCCACCGCCGCCACCTCCGTCGAGGAGCAGCGCAGCGCCGTCACAGCGCGCACCAATAGATCTGGTTACTGTGCTCGACGTTGGTGGAAGCATGAGCAGCGCGAAGCTACACATGCTAAAGCGCGCGATGCGTTTGGTAATCTCATCCCTTGGCCCCGCAGACAGGCTCTCCATCGTGGCTTTCTCAGCCATATCGAAGCGGCTCTTACCTTTACGAAGAATGACAAGCCAAGGTCAGCGCGTGGCTCGGCGCATCGTTGACCGGCTGGTCATAGGTCAAGGCTCCAGCGTGGGGGATGCGTTGAGGAAAGCCACAAGAGTGTTAGAAGATCGCAGAGAAAGAAACCCGGTGGCGAGCGTGATGCTGTTGTCAGACGGTCAAGAAGAGAGGGTCCAGAATCAGAGAGGTAACAGTAATCAGCGGAAGTCATCGAGCCACGTGTCGTCGACGCGGTTCGCGCATATCGAGATTCCGGTACATGCGTTTGGGTTTGGGGCGAAGAGCGGTTACAGCCAGGAACCGGGGGAGGAGGCGTTTGCGAAGTGCGTGGGTGGGTTATTGAGCGTGGTGGTGCAGGATTTGAGGATTCAAGTGGGGTTTGAGTCTGATGAATCGGCGGTTGAGATCAGCGCGATATACTCGTGCAGTGGAAGGCCCACGTTGCTGAGTTCAGGGGCGGTGCGGCTGGGCGATTTGTACGCCGAGGAAGAGAGAGAGCTTTTGGTAGAGTTGAGAGTGAGAGTTCCAGCGTCTTCGTCGTCGTTGTCAGGGTCCCACCACCACGTGATGACGGTTCGGTGTCTGTATAAAGACCCTGTTAGCCAGGAGATCGTATACGGTAGGGAGCAGGGGCTTCTTGTACCGGCGGCGCAGAGCGTGCGTTGTTCCGGTACAAGGATTCAGAGGCTAAGGAATCTCTTCATAACAACCCGAGCCATTGCAGAGTCTAGGAGGCTCGTCGACCATAGCGCTGACTTCACAAGCGCTCATCATTTGCTTGCCTCGGCTCGTACACTTCTCATGCAGTCTACTTCGGCTTCGGCTGAGGAATATGTTCGCGGCTTGGAGGCTGAGCTGGCTGAGCTTCATTGGAGGAGACAACATGAACAGCAGCAGCATCGGAGAAGAGGGATTGCGCAGGTGGACGAGAACGGCGAGCCGCTTACACCGACGTCGGCTTGGAGAGCCGCGGAGAAGCTGGCTAAGATGGCAATGGTGAAGAAGTCTTTGAATAGAGTGAGCGACTTGCACGGCTTCGAAAACGCTAGATTTTAA 2214 0.5542 MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGGSNPSTPRLRCTTVPETASRNESPRVQSKNTPRATLSVSNPTSPRSPLKLSLFKNSFKFRQSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAPQSATQNDVVAVPNASSNKKPTENSSPVFKAYNNHVEPPQPKHSDSLRSYDDDEPLLSPASGGRIIPIPEVDENAEDDEDEDAGEFQGFFVNPKNSSSSKYYSDSLLTSERDSRTVQVKLMPECAVISATRTHETYALVLKVKAPPPPPPSRSSAAPSQRAPIDLVTVLDVGGSMSSAKLHMLKRAMRLVISSLGPADRLSIVAFSAISKRLLPLRRMTSQGQRVARRIVDRLVIGQGSSVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNSNQRKSSSHVSSTRFAHIEIPVHAFGFGAKSGYSQEPGEEAFAKCVGGLLSVVVQDLRIQVGFESDESAVEISAIYSCSGRPTLLSSGAVRLGDLYAEEERELLVELRVRVPASSSSLSGSHHHVMTVRCLYKDPVSQEIVYGREQGLLVPAAQSVRCSGTRIQRLRNLFITTRAIAESRRLVDHSADFTSAHHLLASARTLLMQSTSASAEEYVRGLEAELAELHWRRQHEQQQHRRRGIAQVDENGEPLTPTSAWRAAEKLAKMAMVKKSLNRVSDLHGFENARF 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0096 737 SMART ring_2 108 152 IPR001841 -
Aed10g0096 737 ProSiteProfiles VWFA domain profile. 333 478 IPR002035 -
Aed10g0096 737 Pfam RING-like zinc finger 108 137 IPR001841 -
Aed10g0096 737 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 737 - -
Aed10g0096 737 MobiDBLite consensus disorder prediction 183 237 - -
Aed10g0096 737 Coils Coil 665 685 - -
Aed10g0096 737 MobiDBLite consensus disorder prediction 183 200 - -
Aed10g0096 737 CDD RING-H2 108 153 - -
Aed10g0096 737 SMART VWA_4 331 519 IPR002035 -
Aed10g0096 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 213 IPR013083 -
Aed10g0096 737 MobiDBLite consensus disorder prediction 440 460 - -
Aed10g0096 737 MobiDBLite consensus disorder prediction 679 702 - -
Aed10g0096 737 SUPERFAMILY RING/U-box 107 158 - -
Aed10g0096 737 SUPERFAMILY vWA-like 331 508 IPR036465 -
Aed10g0096 737 MobiDBLite consensus disorder prediction 679 694 - -
Aed10g0096 737 MobiDBLite consensus disorder prediction 1 90 - -
Aed10g0096 737 Pfam von Willebrand factor type A domain 334 440 IPR002035 -
Aed10g0096 737 Gene3D von Willebrand factor, type A domain 333 501 IPR036465 -
Aed10g0096 737 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 737 - -
Aed10g0096 737 MobiDBLite consensus disorder prediction 43 90 - -
Aed10g0096 737 CDD vWA_C3HC4_type 332 504 - -
Aed10g0096 737 ProSiteProfiles Zinc finger RING-type profile. 108 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0096 Aed-Chr10 738192 741237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0096 101 253 C3H Transcription Factor Family AT3G03550 26.543 2.38e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0096 - - gmx:100782780 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0096 10 738192 741237 Aed10g0096 10 738192 741237 ECH