Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0050 ATGATGGCGGTGAGTTCAGGGTGCAGCAGCAAAGATGGGAGCAAGGTGGCACTGGACAACGGGAAGTACGTGAGGTACACACCTGAACAGGTGGAAGCACTTGAGAGGCTCTACCATGACTGTCCCAAACCAACTTCCCTTCGCCGCCAACAACTCATTAGAGAGTGTCCCATTCTCTCCAACATCGAACCCAAACAGATCAAGGTTTGGTTCCAAAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGGTGTGAACAGAAAGCTTTCAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTTGTCTATGAAAACAGCTTTTTCCGCCAACAGACACCCAACAACGCGACCGTTGCCACGACGGACACGAGTTGTGAGTCGGTGGTGACGAGCGGTCAGCGGAACTTGACACCGCCGCAGCATCCACCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTAGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTATAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTAAATGTGATGTCCACTGGGAATGGTGGAACCATTGAGCTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCACCTGGTCGTGACTTCTGGTTGCTGCGCTACACTTCACTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTCAACAACACTCAGAATGGTCCTGCTATGCCCCCAGTTCAGCATTTTGTTAGAGCGGACATGCTGCCAAGTGGGTATTTGATAAGACCTTGCGAAGGAGGGGGATCCATTATTCATATCGTTGATCATATGGTTCTAGAGCCCTGGAGTGTACCTGAGGTTTTGCGCCCACTTTATGAGTCATCAATGCTGCTTGCTCAAAGGACAACTATGGCTGCCTTACGCCATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACGGGATGGGGAAGAAGGCCTGCAGCTCTACGTGCGCTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTTACCCTTCTTGTGAATTCCTCACCTAGCAAGATGATGGGAGTAAATCTTGGCTATAATAACAATGGTTTTCCTTCTGTGACCAGTTCTGTGTTATGTGCCAAAGCATCTATGTTGCTACAGAATGTCCCTCCAGCTATTCTTCTTAGATTCTTGAGGGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCTCGACCAGGAGGAGGCTTTGGGGGTCAATTCATGGAAGTAATTAAGCTTGAGAACATGGGCTATTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAATTCAGAAGGTTTTTTCCAACCTTCAAGTCCATAGCTAATAGTCCTTCTGGTTGCACCTTTCCACAGCTTTGCAGCGGAGTGGACGAGCACGCAGTTGGCACCAGTGCAGAACTTGTTTTCGCTCCAATTGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACGGATGCGGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAGGTCGGAACCACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCCGGGAGCACAAAGTCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTGCACCTTCAAGAGAACATAGCAACTATGGCACGACAATATGTTCGTAGCATCATTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCTCACAATGCTTTTCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATAGGTTCTATCTAGGAGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCTCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGGCATTGCCGGTTTTTACGTTCGCAAATCAAGCTGGACTTGACATGCTTGAAACAACTTTGGTTGCCCTTCAAGACATCACTCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACTCTGTGCACTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCGAGCATGGGGAGGCCAGTGTCGTATGAGAGAGCAGTTGCATGGAAAGTGTTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2565 0.4784 MMAVSSGCSSKDGSKVALDNGKYVRYTPEQVEALERLYHDCPKPTSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLSAMNKLLMEENDRLQKQVSQLVYENSFFRQQTPNNATVATTDTSCESVVTSGQRNLTPPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGIEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGVNLGYNNNGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARPGGGFGGQFMEVIKLENMGYYRDDMSIPGDVFLLQFRRFFPTFKSIANSPSGCTFPQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSGTDAASPNRTLDLASALEVGTTANKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQENIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0050 854 CDD homeodomain 22 82 IPR001356 GO:0003677
Aed10g0050 854 PANTHER CLASS III HD-ZIP PROTEIN CNA1 9 548 - -
Aed10g0050 854 PANTHER CLASS III HD-ZIP PROTEIN CNA1 567 854 - -
Aed10g0050 854 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Aed10g0050 854 SMART HOX_1 19 85 IPR001356 GO:0003677
Aed10g0050 854 Gene3D - 201 383 IPR023393 -
Aed10g0050 854 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Aed10g0050 854 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 567 854 IPR044830 GO:0003700
Aed10g0050 854 Pfam START domain 168 376 IPR002913 GO:0008289
Aed10g0050 854 Coils Coil 91 118 - -
Aed10g0050 854 CDD bZIP 74 113 - -
Aed10g0050 854 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 9 548 IPR044830 GO:0003700
Aed10g0050 854 SUPERFAMILY Bet v1-like 167 378 - -
Aed10g0050 854 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Aed10g0050 854 SMART START_1 167 377 IPR002913 GO:0008289
Aed10g0050 854 CDD START_ArGLABRA2_like 162 377 - -
Aed10g0050 854 MobiDBLite consensus disorder prediction 143 162 - -
Aed10g0050 854 Pfam MEKHLA domain 713 853 IPR013978 -
Aed10g0050 854 Gene3D - 14 87 - -
Aed10g0050 854 Pfam Homeodomain 22 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0050 Aed-Chr10 341428 347961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0050 18 854 Homeobox Transcription Factor Family AT4G32880 76.464 0.0 1336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed10g0050 START 1.5e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0050 K09338 - gmx:100815727 1583.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0050 10 341428 347961 Aed10g0050 10 341428 347961 ECH