Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0049 ATGGAAGCACAAGAGTTTTTCCAGTCCGACACCAACGCCGACCACTTCCTCGTCGAAGACTTCTTCGACTTCTCCAACGACGACGACGCCACCGCCGTCACCGACGCCACCTTCGACTCCCTCCCCACCGAAGACGTCGACTCTCCCCCCCACCGTAACCCCCCTCGACACCGCCAACACCTCCAATTTCCCCCCCCGGTGACCTCTCCCTCCCGGTACACACGTGTCTCTAATATCTATTCATTCTCATGCCTATGTTATGATGATCTTGCGGAATTGGAATGGATGTCGAAATTCGCGGAGGAATCGTTTTCGTGCGAGGATTTGCAGAAGCTGCAGCTGATATCCGGTTCGGGTGCGAGTGTGAGAGCACAAAACGAGGCCGCAACGTCCGAAACGCGTGACCCGAACCCGGCTACGTTCAAGCCGCAAGTGTCGGTTCGGGGCAAGGCCCGGAGCAAGCGGACACGTGGGCCCCCATGCAACTGGACCTCGCGCCTCGTTGTCCTGTCCCCGAACAACATGACGTCGCCTTCTTCGTCTTCTTCTTCAAGGAGGGAAGCCGAGGAAGGCGGCAGCGAGGGGAGGAAGTGCCTGCATTGCGCGACGGACAAGACACCGCAGTGGCGGACTGGGCCCATGGGCCCGAAGACGCTATGCAACGCGTGCGGCGTGAGGTACAAGTCGGGCAGGCTCGTGCCCGAGTACAGGCCCGCGGCGAGCCCGACGTTCGTTCTGACAAAGCACTCGAATTCGCACCGGAAGGTGCTGGAGCTGCGGCGCCAGAAGGAAATGGGGAAGGTCCAGCAGCAACACTTGCTCCAACTCCAACTGCAACAACAGAACATCATGTTCGATGTTGTTCCATCCAACGGTGAGGATTACTTGATCCATCAGCACGTGGGCCCTCACTTCACTCACCTCATTTAG 930 0.5882 MEAQEFFQSDTNADHFLVEDFFDFSNDDDATAVTDATFDSLPTEDVDSPPHRNPPRHRQHLQFPPPVTSPSRYTRVSNIYSFSCLCYDDLAELEWMSKFAEESFSCEDLQKLQLISGSGASVRAQNEAATSETRDPNPATFKPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNNMTSPSSSSSSRREAEEGGSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMGKVQQQHLLQLQLQQQNIMFDVVPSNGEDYLIHQHVGPHFTHLI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0049 309 Gene3D - 191 242 IPR013088 GO:0006355|GO:0008270
Aed10g0049 309 MobiDBLite consensus disorder prediction 166 186 - -
Aed10g0049 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 256 - -
Aed10g0049 309 CDD ZnF_GATA 197 244 IPR000679 GO:0006355|GO:0043565
Aed10g0049 309 Pfam GATA zinc finger 198 231 IPR000679 GO:0006355|GO:0043565
Aed10g0049 309 PANTHER GATA TRANSCRIPTION FACTOR 11 309 - -
Aed10g0049 309 MobiDBLite consensus disorder prediction 37 69 - -
Aed10g0049 309 MobiDBLite consensus disorder prediction 125 140 - -
Aed10g0049 309 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Aed10g0049 309 ProSiteProfiles GATA-type zinc finger domain profile. 192 228 IPR000679 GO:0006355|GO:0043565
Aed10g0049 309 SMART GATA_3 192 242 IPR000679 GO:0006355|GO:0043565
Aed10g0049 309 MobiDBLite consensus disorder prediction 125 197 - -
Aed10g0049 309 PANTHER GATA TRANSCRIPTION FACTOR 11 309 - -
Aed10g0049 309 PIRSF Txn_fac_GATA_plant 1 288 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0049 Aed-Chr10 331150 332442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0049 3 309 C2C2-Gata Transcription Factor Family AT4G32890 45.783 4.67e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed10g0049 GATA 2.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0049 - - gmx:100776588 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0049 10 331150 332442 Aed10g0049 10 331150 332442 ECH