Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0041 ATGAGAGTTTCATCAACAGAAGAGGCGGAGAGCAAGAAGATAAAACGCATTCGCGGGGACTCGAGTAAGCACCCGGTGTACCGCGGCGTGCGTATGCGGAACTGGGGGAAATGGGTGTCGGAAATCCGGGAGCCGCGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCCACGCCAGAAATGGCGGCCAGGGCACACGACGTCGCCGCTCTCAGCATCAAAGGCTCCACCGCCATTCTCAACTTCCCTCACTTGGCAAACTCGCTCCCTCGCCCGGCTACGCTCACGCCTCGCGATGTTCAAGCCGCCGCGGCTAAGGCGGCTCACATGGACCCCTCCTCTCTCTCCTCCTTGTCCTCTGCCTCTGACGAGTTGACCCAAATAATTGAGCTTCCTTCTTTGGAAAGCACCGATGACTTGGAGAAAGAGTTTGTCTTTGTCGATTCCCCCGACACCTGGATGTATCAGCCTCCCTTTGCTTTTCACACCGAACAAGACACTTGTTTCGAGGGTGCTTTCATGTGGAATTACTAG 534 0.5599 MRVSSTEEAESKKIKRIRGDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSTAILNFPHLANSLPRPATLTPRDVQAAAAKAAHMDPSSLSSLSSASDELTQIIELPSLESTDDLEKEFVFVDSPDTWMYQPPFAFHTEQDTCFEGAFMWNY 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0041 177 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Aed10g0041 177 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Aed10g0041 177 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Aed10g0041 177 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Aed10g0041 177 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Aed10g0041 177 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Aed10g0041 177 MobiDBLite consensus disorder prediction 1 22 - -
Aed10g0041 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 165 - -
Aed10g0041 177 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Aed10g0041 177 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Aed10g0041 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0041 Aed-Chr10 274361 274894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0041 5 166 AP2-EREBP Transcription Factor Family AT5G11590 58.115 6.85e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed10g0041 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0041 K09286 - gmx:100813069 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0041 10 274361 274894 Aed10g0041 10 274361 274894 ECH