Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0019 ATGGCTTGCTCAAGCGCTCAAATACACGGGCTCGGAACCCCGTCGTCCCGAACCTTATTTTTAGGTCAGCGGCTAAATACGAATACGAAGGCCTTTATCAAGGTGAAGACAACAGCAAGGAGGGTCCGGCCTTTGAGAGTCGTAAATGAGAAAGTGGTGGGTATCGATTTGGGAACGACGAACTCAGCCGTGGCCGCCATGGAAGGAGGGAAGCCGACCATAATAACGAACGCGGAGGGGCAGAGAACGACGCCCTCCGTGGTGGCCTACACGAAGAACGGAGACAGGCTGGTGGGGCAAATCGCGAAGCGTCAGGCCGTGGTTAACCCTGAGAACACATTCTTCTCCGTCAAGAGGTTCATCGGTAGGAAGATGTCCGAGGTCGACGAAGAGTCCAAGCAGGTCTCTTACAGAGTTATCAGAGATGACAACGGAAACGTCAAGCTCGACTGCCCGGCCATTGGGAAGCAGTTTGCTGCGGAAGAAATTTCAGCACAGCGTCTCACTGAGACTGCTGAGAAAGCCAAGATGGAGCTCTCATCATTGACTCAAACTAACATCAGTTTGCCATTCATAACTGCCACAGCAGACGGTCCTAAACATATTGAGACCACCATCACAAGGGCTAAATTCGAGGAATTGTGTTCAGATCTTCTTGACAGGCTCAGGACACCAGTTGAAAACTCGTTGAGGGATGCAAAACTCTCATTTAAGGATCTTGACGAAGTCATCCTTGTTGGTGGATCAACACGTATCCCTGCTGTTCAGGAGCTTGTAAAGAAGTTGACTAGCAAGGACCCAAATGTCACTGTCAATCCAGATGAAGTGGTTGCCCTTGGAGCTGCAGTTCAGGTGCAGAGAATGGTAAATGAAGCTGAGAGGTTTTCAAAGGAAGACAAAGAGAAGAGGGATGCCATTGACACAAAGAACCAGGCAGATTCTGTGGTGTACCAGACAGAAAAGCAATTGAAAGAGCTTGGAGACAAGGTTCCTGGCCCCGTGAAAGAGAAGGTTGAAGCAAAACTAGGGGAGCTTAGAGAAGCAATTTCTGGGGGTTCAACCCAAGCTATTAAGGATTCCATGGCTGCCCTCAATCAGGAAGTTATGCAGCTTGGTCAGTCCCTTTACAACCAGCCAGGAGCTGCAGGTGCAGGAGGGCCAACACCACCTGGTGCTGACTCTGGCTCCGGCCCCTCAGAATCCTCAGGCAAGGGTCCTGATGGTGATGTCATCGATGCTGATTTCACCGATTCTAAATGA 1260 0.5032 MACSSAQIHGLGTPSSRTLFLGQRLNTNTKAFIKVKTTARRVRPLRVVNEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIETTITRAKFEELCSDLLDRLRTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKLTSKDPNVTVNPDEVVALGAAVQVQRMVNEAERFSKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVEAKLGELREAISGGSTQAIKDSMAALNQEVMQLGQSLYNQPGAAGAGGPTPPGADSGSGPSESSGKGPDGDVIDADFTDSK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0019 419 MobiDBLite consensus disorder prediction 294 313 - -
Aed10g0019 419 PRINTS 70kDa heat shock protein signature 102 110 - -
Aed10g0019 419 PRINTS 70kDa heat shock protein signature 79 91 - -
Aed10g0019 419 PRINTS 70kDa heat shock protein signature 51 64 - -
Aed10g0019 419 PANTHER HEAT SHOCK PROTEIN 70KDA 166 284 IPR013126 GO:0005524|GO:0140662
Aed10g0019 419 Gene3D - 285 379 IPR029048 -
Aed10g0019 419 Gene3D - 53 167 - -
Aed10g0019 419 Gene3D - 273 284 - -
Aed10g0019 419 SUPERFAMILY Actin-like ATPase domain 52 180 IPR043129 -
Aed10g0019 419 PANTHER 70 KDA HEAT SHOCK PROTEIN 166 284 - -
Aed10g0019 419 PANTHER 70 KDA HEAT SHOCK PROTEIN 285 389 - -
Aed10g0019 419 PANTHER 70 KDA HEAT SHOCK PROTEIN 33 168 - -
Aed10g0019 419 MobiDBLite consensus disorder prediction 375 419 - -
Aed10g0019 419 Gene3D - 223 272 - -
Aed10g0019 419 Gene3D Actin; Chain A, domain 4 168 222 - -
Aed10g0019 419 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 283 370 IPR029048 -
Aed10g0019 419 SUPERFAMILY Actin-like ATPase domain 157 286 IPR043129 -
Aed10g0019 419 Pfam Hsp70 protein 166 285 IPR013126 GO:0005524|GO:0140662
Aed10g0019 419 ProSitePatterns Heat shock hsp70 proteins family signature 1. 55 62 IPR018181 -
Aed10g0019 419 ProSitePatterns Heat shock hsp70 proteins family signature 3. 243 257 IPR018181 -
Aed10g0019 419 Coils Coil 165 185 - -
Aed10g0019 419 MobiDBLite consensus disorder prediction 294 309 - -
Aed10g0019 419 PANTHER HEAT SHOCK PROTEIN 70KDA 33 168 IPR013126 GO:0005524|GO:0140662
Aed10g0019 419 PANTHER HEAT SHOCK PROTEIN 70KDA 285 389 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0019 Aed-Chr10 142239 144729 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0019 166 351 Calmodulin-binding Proteins AT5G02500 37.563 7.15e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0019 K03283 - gmx:100807713 311.997