Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed10g0018 | ATGAGGACGAATCACCGAAAAATAAACTATGGTAGAAAGGTCCTTCCACGGCCGTCGAATGGGGTGCTTCGATATATGGGCGGGGAGACACGTGTGGTTAGCGTGGGACGTGACCTAACATTTAGCGGTATAATGAAGAAGGTGAATAGCATGACAATGGCAATGATAGAAAGAGAGACATTTTTAAAATACCAATTGATAACAGAAGATCTAGATGCATTGGTGTCAATGAGAATGGAAGAAGACGTGAAACACATGATAGAGGAGCACAATCGGCATCAAACAGGAACCTTACTCCGTGCATTCCCCTTCCCTCCTTCCAAGCCTATGCCTACAACTTTGATTGCCTTATCCGAACAAGCTCGAGGACCACTGCCACTGCCAAGGGCTCTGCTTGTTCTTCCCTGA | 408 | 0.4608 | MRTNHRKINYGRKVLPRPSNGVLRYMGGETRVVSVGRDLTFSGIMKKVNSMTMAMIERETFLKYQLITEDLDALVSMRMEEDVKHMIEEHNRHQTGTLLRAFPFPPSKPMPTTLIALSEQARGPLPLPRALLVLP | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed10g0018 | 135 | Gene3D | - | 24 | 102 | - | - | |
| Aed10g0018 | 135 | PANTHER | OS05G0427100 PROTEIN-RELATED | 10 | 109 | - | - | |
| Aed10g0018 | 135 | CDD | PB1_UP2 | 9 | 104 | - | - | |
| Aed10g0018 | 135 | PANTHER | OS05G0427100 PROTEIN | 10 | 109 | - | - | |
| Aed10g0018 | 135 | Pfam | PB1 domain | 23 | 98 | IPR000270 | GO:0005515 | |
| Aed10g0018 | 135 | SUPERFAMILY | CAD & PB1 domains | 21 | 108 | - | - | |
| Aed10g0018 | 135 | SMART | PB1_new | 18 | 102 | IPR000270 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed10g0018 | Aed-Chr10 | 139198 | 139622 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed10g0018 | 14 | 104 | MAP Kinase Kinase Kinase | AT5G57610 | 45.745 | 8.97e-19 | 79.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed10g0018 | - | - | gmx:100800353 | 139.428 |