Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0016 ATGGCGTCTGCTAGCCTTGGAAGTGGCGGGGTCGGCAGTTCGAGGTCTGTTAATGGTGGCGTCGGTTTCAGGGGTTCTTCAAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGAGGTTGAGAGACCACGAGGACGACGACGATAGAGATAGTGAGCCTGACATCATTGATGGTGTGGGTGCTGAGACAGGGCACGTGATAAGAACCAGCATTGGTGGCCGAAATGGTCAATCTAAGCAGAATGTTAGTTATATTGCAGAGCATGTAGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCTAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTAAGGCATTGTTTCTTTTCAACGACTGACAAAGAGGAAGTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTCAATCGCATTGCGAGGAGCTATAGCAGGATTAACCAACGAATGCCCTTAATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTGGTGAACCCGCACACTCATCAGCTGAAACTGTGTGATTTTGGCAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTACATATGTTCAAGATACTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGATGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAAAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTGCCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCATTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACTCCCGCCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGAACTTTCTGGTATACCTCCTGATGTCATCAATCGGCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1275 0.4376 MASASLGSGGVGSSRSVNGGVGFRGSSSSVDWLGREMLEMRLRDHEDDDDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNSRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0016 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Aed10g0016 424 CDD STKc_GSK3 81 373 IPR039192 -
Aed10g0016 424 Gene3D Transferase(Phosphotransferase) domain 1 166 414 - -
Aed10g0016 424 SMART serkin_6 86 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0016 424 Gene3D Phosphorylase Kinase; domain 1 71 165 - -
Aed10g0016 424 ProSitePatterns Protein kinases ATP-binding region signature. 92 116 IPR017441 GO:0005524
Aed10g0016 424 ProSiteProfiles Protein kinase domain profile. 86 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0016 424 MobiDBLite consensus disorder prediction 1 20 - -
Aed10g0016 424 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 421 - -
Aed10g0016 424 SUPERFAMILY Protein kinase-like (PK-like) 85 397 IPR011009 -
Aed10g0016 424 Pfam Protein kinase domain 88 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0016 424 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0016 Aed-Chr10 126733 134047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0016 92 378 Core Cell Cycle Gene Families AT1G76540 35.593 3.27e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Aed10g0016 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0016 K03083 - gmx:100799387 798.119