Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0010 ATGGGTTGTATATGCTCCAAAGGAAAATCTGCAGACGAATATGTTGCTGAAAACCATGCCAAAGATAGATCCTCCAACACCAAGCATTTGGGATTGGGGACAGAGAATGATGCTACGGCTAGCCTAATATCCAATGCAAATGCAATTGCAACGGAAGGTTCCACCTCAGTTTCCTCGGATGAAGGGGACAAGAATGCCAATGTCGTGGGATCATCATCGGGACAAGGACCTCAACCTAAGCTGTGTAGGATCTTTAGTGTAACTCGTGGGGAAAGAGGAGTACATGTTCTTGCTGGCTGGCCCTCTTGGCTCACTGCAGTTGCTGGCGAAGCCATTAGTGGTTGGATACCTCGCAGGGCTGATTCCTTTGAGAAGCTGGATAAGGCAACTCCTCCCTCCCTTTATTTTTTGAAAAGCCTACCATTACTTTTTCCTTATCATATTCATGCTGCAGATTGGCCAAGGAACTTACAGCAAGCTCGTGATCTCGAAACAAATAAAATTGTTGCCCTGAAGAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTTCGTTTTATGGCTAGGGAAATTATTGTGTTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTGTTTTTGAATATATGGACCATGATCTTGCAGGCCTTGCAGCAATACCCGGCATCAAGTTTACGGAACAACAGATCAAGTGTTACATGCAACAGCTTCTTCGCGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGATATCAAGGGCTCAAATCTTCTGCTTGACAGTAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCAACTTTGTTTCAGCCATCCCACGGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTAGGAGCTACAGATTATGGTGTTACTGTGGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTTGGGAAGCCTATAATGACTGGACGAACAGAGGTGGAGCAACTACATAAAATCTTCAAACTCTGTGGATCTCCATCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCAACAGTTTTTAAACCTCAACAACCTTACAAACGGGTTGTTTCTCAGACATGCAATGATATTCCTTCATTTGCACTGAGCCTCTTGGAGGTCCTTCTTGCTGTAGAACCGAAAGATCGAGGAACCGCATCTTTAGCACTTCAGCATGAGTTCTTCACAGCAATGCCACTTCCTTGTAATCCATCAACTTTGCCAAAGTACCCACCAAGTAAGGAATTTGATGCCAAAGTTCGCAAAGAGGAAGCTAGAAGACAAAGAGCAGCTAATAAAGGATATGAACATGCATCAGCTGGGAGAAGTTTTAGAGAGTCCAAAGCTGTGGCAATACCTGATGCTAATGCTGAGTCTCATGCAACTATGGGGAGACAAGGACAGTGTAATTCTAAGTGCATTACTGAGAAGTACAATCCTAAAGAGGATGGCGATTATGGATTCCCTCATGAACCGGCAAAGTCAAGAGCACTCAATGTATTATCTCATTCTGGCCAGTCAATGCATCCAAGTGTATATGGCTCCTCACGCAATATGAATTTGAAGGAGGAAGATGCTGTCACTTGCCCTGATCATGGCTTTAGATCAAGAAACTCTGAGTTCAGAAAACAAAAATCCTATTTGCAAGGTAGCACTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACTGCTTGATACCAGTGGTGACTTTAGTTGGCCAGAAGATCAATTTGGCATGAGATATAGCCATCAGGCTGATTGTGAGTCCAACCAATTGTTGGATGGACTCAAATATTCACAGAAGAAGGACTTTCATCCTATTGGGAAGGATCGCACTAAGGACTATGCTAACAAAAATGCCTGCATGCACCATTCTGGACCGTTGCTGGCTCCAGAGGATAATCTTGAAGAAATGCTCAAGGAACATGAAAGGCAAATCCAACTGGCTTTCCGCAAAGCTCGTTTGGGTAAGGACAAGCCAAAAAAGGCTGACTGTGGGAATGGCCTAACTGAATCACTATTTCACCATGTGAGAAATCAAGACGATTACCTGTTTAAGCTTCTCCTAATCGGCGACTCCTCCGTTGGAAAATCTTGCTTGCTTCTCAGATTCGCCGATGATTCCTATGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACCGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGTTTCAGGACTATAACAAGCAGCTATTATAGAGGAGCACATGGAATCATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAGCAGTGGTTAAATGAGATCGATAGATATGCAAATGACAGTGTATGCAAGCTTCTCGTGGGGAATAAATGTGATCTAATTGATAACAAGGTTGTAGATTCACTAACTGCCAAGGCATTTGCGGATGAGCTTGGTATCCCTTTCCTCGAGACAAGTGCTAAAGACTCGATCAATGTGGAGCAGGCTTTTTTGACTATGGCAGCAGAGATTAAGAAGAAGATGGGAAGCCAAACAACTGCTGGTAAGTCGGCAGAAACTGTTCAAATGAAGGGGCAACCGATCCCACAGAAGAACAACTGCTGTAGTTAG 2748 0.4363 MGCICSKGKSADEYVAENHAKDRSSNTKHLGLGTENDATASLISNANAIATEGSTSVSSDEGDKNANVVGSSSGQGPQPKLCRIFSVTRGERGVHVLAGWPSWLTAVAGEAISGWIPRRADSFEKLDKATPPSLYFLKSLPLLFPYHIHAADWPRNLQQARDLETNKIVALKKVRFANMDPESVRFMAREIIVLRRLDHPNVMKLEGMITSRVSGSLYLVFEYMDHDLAGLAAIPGIKFTEQQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDSNGNLKIGDFGLATLFQPSHGQPLTSRVVTLWYRPPELLLGATDYGVTVDLWSAGCILAELFVGKPIMTGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATVFKPQQPYKRVVSQTCNDIPSFALSLLEVLLAVEPKDRGTASLALQHEFFTAMPLPCNPSTLPKYPPSKEFDAKVRKEEARRQRAANKGYEHASAGRSFRESKAVAIPDANAESHATMGRQGQCNSKCITEKYNPKEDGDYGFPHEPAKSRALNVLSHSGQSMHPSVYGSSRNMNLKEEDAVTCPDHGFRSRNSEFRKQKSYLQGSTAKLSRFSNSVAVRGDSLLDTSGDFSWPEDQFGMRYSHQADCESNQLLDGLKYSQKKDFHPIGKDRTKDYANKNACMHHSGPLLAPEDNLEEMLKEHERQIQLAFRKARLGKDKPKKADCGNGLTESLFHHVRNQDDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLIDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQTTAGKSAETVQMKGQPIPQKNNCCS 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0010 915 ProSiteProfiles Protein kinase domain profile. 120 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0010 915 ProSiteProfiles small GTPase Rab1 family profile. 718 915 - -
Aed10g0010 915 Gene3D - 716 914 IPR027417 -
Aed10g0010 915 MobiDBLite consensus disorder prediction 892 915 - -
Aed10g0010 915 Gene3D Phosphorylase Kinase; domain 1 156 230 - -
Aed10g0010 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 718 893 IPR027417 -
Aed10g0010 915 Gene3D Transferase(Phosphotransferase) domain 1 231 467 - -
Aed10g0010 915 PRINTS Transforming protein P21 ras signature 764 786 - -
Aed10g0010 915 PRINTS Transforming protein P21 ras signature 826 839 - -
Aed10g0010 915 PRINTS Transforming protein P21 ras signature 861 883 - -
Aed10g0010 915 PRINTS Transforming protein P21 ras signature 723 744 - -
Aed10g0010 915 PRINTS Transforming protein P21 ras signature 746 762 - -
Aed10g0010 915 PANTHER KINASE CDK9, PUTATIVE-RELATED 69 128 - -
Aed10g0010 915 PANTHER KINASE CDK9, PUTATIVE-RELATED 159 694 - -
Aed10g0010 915 MobiDBLite consensus disorder prediction 53 77 - -
Aed10g0010 915 SMART ras_sub_4 720 886 - -
Aed10g0010 915 PANTHER CELL DIVISION PROTEIN KINASE 69 128 - -
Aed10g0010 915 PANTHER CELL DIVISION PROTEIN KINASE 159 694 - -
Aed10g0010 915 Pfam Protein kinase domain 159 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0010 915 SMART rho_sub_3 725 884 IPR001806 GO:0003924|GO:0005525
Aed10g0010 915 SMART ran_sub_2 728 914 - -
Aed10g0010 915 SMART arf_sub_2 703 898 - -
Aed10g0010 915 ProSiteProfiles small GTPase Ras family profile. 717 915 IPR001806 GO:0003924|GO:0005525
Aed10g0010 915 SMART rab_sub_5 723 886 - -
Aed10g0010 915 CDD STKc_CDK9_like 160 427 - -
Aed10g0010 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Aed10g0010 915 CDD Rab1_Ypt1 721 886 - -
Aed10g0010 915 SMART serkin_6 158 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0010 915 Pfam Ras family 724 884 IPR001806 GO:0003924|GO:0005525
Aed10g0010 915 TIGRFAM small_GTP: small GTP-binding protein domain 721 878 IPR005225 GO:0005525
Aed10g0010 915 ProSiteProfiles small GTPase Rho family profile. 716 884 - -
Aed10g0010 915 Coils Coil 670 690 - -
Aed10g0010 915 SUPERFAMILY Protein kinase-like (PK-like) 159 434 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0010 Aed-Chr10 86148 98654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0010 160 465 Core Cell Cycle Gene Families AT5G10270 49.533 3.18e-98 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed10g0010 Pkinase 9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0010 - - gmx:100805055 1165.6