Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0008 ATGGGACGACAAGAACCGGGGGGCAGTGATCAATGGGTGAAGGGTAAACTAGTTGGATGTGGATCTTTTGGCAGTGTCCATTTGGCAATGAACAAATCGACCGGTGGGCTTTTTGTTGTGAAATCACCACATTCGAGGGCTGGACGACAAGCTTTGGATAAAGAGGTTAAAATCCTAAACAGTTTAAAATCGCCATATATTGTCCAATGTTTGGGGACTGAGGACCAAGGCAAACTCAATGTTTTTATGGAGTATATGGCCGGTGGTAGTTTGGCAGATCTGGCACACAAGTTTGGTGGCTCATTAGATGAAGAGGTGGTTCGGGTCTATACCAGAGAAATTCTTCATGGGTTAAAGCATCTTCATCAACATGGAATTGTCCACTGCGACCTTAAGTGCAAGAACGTGCTTTTGGGCTCATCTGGAAACATCAAGCTGGCGGATTTTGGATGTGCGGTGGTCAATGGTAATAATAATACTAATAATAATATTGGTGGTACTCCTCTTTGGATGGCTCCTGAAGTATTGAGGAACGAATCTCCGAATTTTGCTGCAGATATATGGTCCTTGGGATGTACAGTTATTGAGATGGCTACTGGCACCCCTCCTTGGGCTCATCAGCTTTCAAATCCAATCACTGCTGTTCTCACCATTGCCCATGCTGATGCTATTCCTCATTTTCCACCCAATTTCTCCAACGAAGGTTTCGATTTCTTGACCAGGTGCTTTGAGAGACAACCCGATAAGAGGCCTACGGTTCAGGACTTACTTACCCATCCATTTGTTTCAACCACACCAACACCACCACCTGTTTCTCACCGTTCGCCGGGGAATGATTTCTCCTTCACTAACACATGTCATGATCTTGACCACCCCAAAGACCTTGCATTCGGCACATCAGGGAATTGGATTACTGTTAGATCAGGCTGA 930 0.4527 MGRQEPGGSDQWVKGKLVGCGSFGSVHLAMNKSTGGLFVVKSPHSRAGRQALDKEVKILNSLKSPYIVQCLGTEDQGKLNVFMEYMAGGSLADLAHKFGGSLDEEVVRVYTREILHGLKHLHQHGIVHCDLKCKNVLLGSSGNIKLADFGCAVVNGNNNTNNNIGGTPLWMAPEVLRNESPNFAADIWSLGCTVIEMATGTPPWAHQLSNPITAVLTIAHADAIPHFPPNFSNEGFDFLTRCFERQPDKRPTVQDLLTHPFVSTTPTPPPVSHRSPGNDFSFTNTCHDLDHPKDLAFGTSGNWITVRSG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0008 309 SMART serkin_6 12 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0008 309 PRINTS Tyrosine kinase catalytic domain signature 185 207 IPR001245 GO:0004672|GO:0006468
Aed10g0008 309 PRINTS Tyrosine kinase catalytic domain signature 166 176 IPR001245 GO:0004672|GO:0006468
Aed10g0008 309 PRINTS Tyrosine kinase catalytic domain signature 83 96 IPR001245 GO:0004672|GO:0006468
Aed10g0008 309 PRINTS Tyrosine kinase catalytic domain signature 120 138 IPR001245 GO:0004672|GO:0006468
Aed10g0008 309 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672|GO:0006468
Aed10g0008 309 Gene3D Transferase(Phosphotransferase) domain 1 4 265 - -
Aed10g0008 309 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Aed10g0008 309 SUPERFAMILY Protein kinase-like (PK-like) 10 280 IPR011009 -
Aed10g0008 309 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 10 271 - -
Aed10g0008 309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Aed10g0008 309 ProSiteProfiles Protein kinase domain profile. 12 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0008 309 Pfam Protein kinase domain 14 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0008 309 CDD STKc_MAPKKK 11 262 - -
Aed10g0008 309 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 10 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0008 Aed-Chr10 78560 79489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0008 3 274 MAP Kinase Kinase Kinase AT3G06030 42.069 3.24e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed10g0008 Pkinase 7.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0008 - K20716 gmx:100804518 478.404