Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0007 ATGAAAATCTACGCGACCATTGGATATCTTAATCTTGTCACTGGAAAATACATAATGTCTGAAGAGGCTGGATCTATGTTGGTAGTTTATGACGATCCCTCTGACCAACGGTCACTATCTTTGGATGATGCAAGCAGCACAGAGGAGTCACCTGATGAAACCAGGCTCTCCCTTGAAACAACAAATGATGCTATTCCATATATTGGTCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCCAAAAGAAGTGGCTTCTCAATTAGACGTCACCGTACAGAAGGAAAGGATGGTGTTGGAAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCAACCGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGTTGTGGGTGTCAAGCTTACATGCGGATCAGCAAAACAACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAATCATGAACTTTTAGAACCAAACCAAGTTCGGTTCCTCCCTGCATACAGAACTATCTCGGATGCTGACAAAAACCGAATACTCATGTTTGCCAAAACAGGAATATCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAGCCTGGATATTTGCCTTTTACTGAAAAAGACGCTTTCTTAGGGTTCATGAATGGGAAGGCTCCACAGACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGGCAACAACAAAACATGCTTTCTGCATATGGATGATAGTTGCAAAGTTTCCATCTTGGTTTAATGCTGTTCTAGGGGAACGGTACAATGAGTGGAAGGCAGAATTTTATAGACTTTATAATCTTGAGTCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGTTCACGCAATCTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCTGGGATGACTACAACTGGTCAGTCAAAGTCAATTAATGCTTTCATTCAACGATTTCTGAGTGCACAGACACGCCTTGCGCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGGGCACCCATGGAATCACATGCTGCCACAATACTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCGTCTTTTTCAATTGAAGATGGTTTTCTTGTGAGGCACCACACCAAAGCTGAGGGAGGTCGGAAAGTTTATTGGGCCCTTCAAGAAGGAATTATAAGTTGTAGCTGCCATCAGTTTGAGTTCACTGGTATTCTCTGTCGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATTCCAGATAGATATCTTCCTATTCGATGGCGTCGGATCAGCATGCCCTCTTCTAAGCTTCTTCAAAGTCCACGAAATGATCACGCTGAAAGAGTTAAGTTATTACAAAATATGGTTTCATCTCTGATGACAGAATCTGCTAAATCTAAGGAACGTTTAGATATTGCGACAGAACAAGTATCCATCCTTCTGTCACGTATAAGAGAACAACCAATTTCGTTACAAGGTGGCCGAGATATTTCGTCCATTAATAGGAATCTTTGA 1749 0.4117 MKIYATIGYLNLVTGKYIMSEEAGSMLVVYDDPSDQRSLSLDDASSTEESPDETRLSLETTNDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDAFLGFMNGKAPQTILTDQNICLKEALSTEMATTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRNLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWALQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISMPSSKLLQSPRNDHAERVKLLQNMVSSLMTESAKSKERLDIATEQVSILLSRIREQPISLQGGRDISSINRNL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0007 582 Pfam SWIM zinc finger 462 490 IPR007527 GO:0008270
Aed10g0007 582 Pfam FAR1 DNA-binding domain 80 173 IPR004330 -
Aed10g0007 582 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 36 228 - -
Aed10g0007 582 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 230 576 - -
Aed10g0007 582 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 228 IPR031052 GO:0006355
Aed10g0007 582 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 230 576 IPR031052 GO:0006355
Aed10g0007 582 ProSiteProfiles Zinc finger SWIM-type profile. 456 492 IPR007527 GO:0008270
Aed10g0007 582 SMART 26again6 467 494 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0007 Aed-Chr10 69964 76360 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed10g0007 FAR1 3.5e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0007 - - pvu:PHAVU_006G220900g 695.656