Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0003 ATGTCTTCCGCTGCGCCAGGCGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCGCATGAAGGGGGGAGAGTTTATTACTTCCCGCAAGGTCACATGGAACAGCTTGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACGAGCCCTGACGATCCTGTGCCTGAACCTCCAAGGTGTACAATCCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTTCCACCGCTGGATATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGTAGGCAGACTTCTTTTGGAGAATGCAACAATTTTTTCAAAAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTACATTGAAGCTCGAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGGAGATAATAAAACGTCAGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCGTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGAGCGAGGCCTCCCATTCTACCTTCAGCAATGCCTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGAATCTGCACCATTCTCTTATCGTGACCATAATCATGGGCGAGACGTCTATCCATCTTCCAATTTCAATTCCACTGCCACTGGTTTTCTTGGTTTTGGTGGGAACTGCTCTGCTTCCAACAAGTCAATATATTGGTCTAGTAGAATGGAAAACACTACAGAATCTTTTTCACCTGTTGCTCTTAAAGAATCTGGAGAGAAGAGACAAGGGACTGCAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTGGATAATTCTAATGGAGAAGAAAGTCTACCAATGGTCACTTTGTCAGGAAGGGTGGGTAATGAGGGCCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATCCCTTCGGTAAGCTGTGATGCTGAAAAATCATGCCTGCGGTCTCCTCAGGAGTCACAGAGCAGGCAAATAAGAAGTTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGATCCACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCATTGTGAGGAAAATTTTCATCTACACTGCTGAGGAGGTGAAGAAGCTTTCACCGAAAATAGGACTTCCAATCAGTGAAGTTAAACCCAGCAAAATGAACTCTGAAGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 1776 0.4414 MSSAAPGATNDALYKELWHACAGPLVTLPHEGGRVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPVPEPPRCTIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRVGRLLLENATIFSKTSRSEFIVSVNKYIEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKTSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRARPPILPSAMPDSSLQGVWKSPVESAPFSYRDHNHGRDVYPSSNFNSTATGFLGFGGNCSASNKSIYWSSRMENTTESFSPVALKESGEKRQGTANGCRLFGIQLLDNSNGEESLPMVTLSGRVGNEGPLPSLDAESDQHSEPSNVNRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEVKPSKMNSEAVVNPEDQSSIVGPGC 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0003 591 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 175 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed10g0003 591 CDD B3_DNA 116 175 IPR003340 GO:0003677
Aed10g0003 591 Gene3D - 213 281 - -
Aed10g0003 591 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 189 554 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed10g0003 591 MobiDBLite consensus disorder prediction 571 591 - -
Aed10g0003 591 SUPERFAMILY CAD & PB1 domains 470 545 - -
Aed10g0003 591 MobiDBLite consensus disorder prediction 430 444 - -
Aed10g0003 591 SUPERFAMILY DNA-binding pseudobarrel domain 108 179 IPR015300 -
Aed10g0003 591 Gene3D - 463 557 - -
Aed10g0003 591 PANTHER AUXIN RESPONSE FACTOR 1 10 175 - -
Aed10g0003 591 MobiDBLite consensus disorder prediction 277 292 - -
Aed10g0003 591 MobiDBLite consensus disorder prediction 275 310 - -
Aed10g0003 591 Pfam Auxin response factor 189 254 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed10g0003 591 Pfam AUX/IAA family 465 558 IPR033389 -
Aed10g0003 591 PANTHER AUXIN RESPONSE FACTOR 1 189 554 - -
Aed10g0003 591 ProSiteProfiles PB1 domain profile. 468 561 IPR000270 GO:0005515
Aed10g0003 591 MobiDBLite consensus disorder prediction 414 444 - -
Aed10g0003 591 Gene3D - 115 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0003 Aed-Chr10 27708 35322 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0003 2 585 B3 DNA Binding Superfamily AT1G59750 59.488 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0003 K14486 - gmx:100793224 773.852