Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g03003 ATGAAGCGCGACTACTATGAAATCTCCGACGACGAATGGGACCAACACGAAGAACAGTTCAAGCCCTCACGAATCCTCAAGAGACCCAACTCCACTCCTCCTTCTCCTCCTCCCATCGAGTCCTTCGCTTACAACAACAATAATTGCCACGACGAGGACGACGATTGCGTTGAAATCACTCGCGCTTCCGCAGCTTTTCCGGACGAATTGGACGATCTGGAGGATGATGACGTGGATAACAACAATTCCACTGCAGCTGCAGCCCCGAATCGTGGCCGTCGGTTCATCATCGACGATGACGACGAAGATGGCGAGGAAGAGGAAAGTAATCGGAATAGGAATAGGAATGTTGCGGAATTGTATGAAATAGGGTCATCTTCTTCGGAGGAAATTGAGGAAGAAGAGGTTATGGAAGGTGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCAAAGATATCGGCGGAGCTGAAGGGGGAGCTTTTCGGGTCGTCGGTGACTGCATGCGACAGGTATTCTGAAGTGGAGTCTTCTTCAGTGAGGATCGTAACTCAGGACGATGTAGACGTTGCGTGTGGGTATGAGGATGAGGATTCGGATTTTCAACCTCTACTGAAGCCGTATCAGCTTGTTGGTGTCAACTTCTTGCTTCTACTGTATCGGAAGCGGATTGGAGGAGCCATATTGGCAGATGAAATGGGGCTGGGCAAAACTGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATAGTATGTCCTGCCTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCATCAGTTTCTACTCTTCAATACCATGGGGCTGGACGAACAGCATATTGCAAGGAGTTGAACTCCCTCTCGAAGGCAGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTCCACAGCAGAAAGATGATCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCGTGCTGATGGATGAAGCTCATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATTTAATGGCTGTTGCACGGAATGCAAACCAACGATTGATGTTGACTGGGACACCACTTCAGAACGATTTACATGAGTTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGGTGTTGACTTAAAAAAGCTGCTCAATCCAGACAATAGAGATTTAATCGGTCGTATGAAGTCTATATTGGGGCCATTTATTTTGCGGCGTTTGAAATCTGATGTGATGCAGCAGCTTGTTCCTAAAATACAGAAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTGTCTCACAAGCTCGGATAGCCAAGTGCTCTGAGCTTAACACCAAATCTGTTCTTGAAGCTCTTCCACGCCGACAAATAAATAACTACTTTGTTCAGTTCAGAAAGATTGCTAACCATCCCTTGCTGATACGGAGAATCTATAATGATGACGATGTCATTCGCTTTGCTAGGAAGTTGCATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTAGACAGAGTTATAGAGGAACTTAAAAGTTACAACGACTTCTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAGAAAAGGGATACTTTCCGAAAACCATGTTATGCTTTCTGCAAAATGTGGGGCCTTGGCAGAGCTTCTTCCTTCACTAAAGAAGGACGGTCATCGTGTCTTGATCTTTAGTCAATGGACGTCAATGCTTGACATATTGGAGTGGACCTTAGATGTCATTGGATTGACCTACAAACGACTTGATGGAAGTACACAGGTGGCTGAAAGGCAAACGATAGTTGATACATTCAACAACAATACTTCCATTTTTGCATGCTTGCTATCGACAAGAGCCGGAGGACAAGGTTTGAACTTAACGGGAGCTGACACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGTCATAGAATTGGTCAAACGAAGCCTGTAACCATATACCGGTTGGTAACTAGGGGAACAGTTGATGAAAATGTATATGAGATCGCGAAGAGAAAGTTGGTACTCGATGCTGCTGTCCTCGAGTCCATGGAGGAGGTTAGTGATGGCGACATGCCTGAGAAAACCATGGGAGAGATATTATCTGCAATTTTGTTGAGTTAA 2262 0.443 MKRDYYEISDDEWDQHEEQFKPSRILKRPNSTPPSPPPIESFAYNNNNCHDEDDDCVEITRASAAFPDELDDLEDDDVDNNNSTAAAAPNRGRRFIIDDDDEDGEEEESNRNRNRNVAELYEIGSSSSEEIEEEEVMEGDVVGRALHKCAKISAELKGELFGSSVTACDRYSEVESSSVRIVTQDDVDVACGYEDEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSVSTLQYHGAGRTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMAVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEGVDLKKLLNPDNRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQKVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSELNTKSVLEALPRRQINNYFVQFRKIANHPLLIRRIYNDDDVIRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILSENHVMLSAKCGALAELLPSLKKDGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNNTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEEVSDGDMPEKTMGEILSAILLS 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g03003 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 733 IPR027417 -
Adu10g03003 753 CDD DEXHc_Snf 204 397 - -
Adu10g03003 753 MobiDBLite consensus disorder prediction 67 115 - -
Adu10g03003 753 PANTHER SNF2/RAD54 HELICASE FAMILY 71 751 - -
Adu10g03003 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 583 734 IPR001650 -
Adu10g03003 753 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 71 751 - -
Adu10g03003 753 SMART ultradead3 200 405 IPR014001 -
Adu10g03003 753 MobiDBLite consensus disorder prediction 1 24 - -
Adu10g03003 753 Gene3D - 190 455 IPR038718 -
Adu10g03003 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 395 IPR014001 -
Adu10g03003 753 Pfam SNF2-related domain 222 510 IPR000330 GO:0005524|GO:0140658
Adu10g03003 753 Gene3D - 541 750 IPR027417 -
Adu10g03003 753 SMART helicmild6 609 692 IPR001650 -
Adu10g03003 753 MobiDBLite consensus disorder prediction 1 53 - -
Adu10g03003 753 CDD SF2_C_SNF 577 703 - -
Adu10g03003 753 Pfam Helicase conserved C-terminal domain 582 692 IPR001650 -
Adu10g03003 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g03003 Adu-Chr10 106088137 106095788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g03003 225 731 RAD5 or RAD16-like Gene Family AT5G22750 27.113 1.67e-46 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu10g03003 SNF2_N 4.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g03003 K14439 - gmx:100806323 1225.69