Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g03000 ATGGCTTCAACTAGCTTCCAACCAAAGAACAAGTCTCCTTCCACTGTGATCAGCTTCTTCAAGATTCTTCTCAGTAAAAGTCTCCAAGCTGGAACTCTTAAGATACCAAGAAAGTTCAGTAGGATATATGGTGGTGGTGTGCCGAATCCAGTGTATCTTAAGCTTCCAGACGGCACTCAATGGAAAATAGATTGGACTAATCATAATGGTGAGATTATATTTGAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTAGATCAAGGGCACTTGTTGTGGTTTGACTATAAAAAAACTTCTCTTTTTGAAGTACACATATTTGACATGAGTTGCCTTGAAATAAACTATCCTCCCTATGATCACACTGATGATGATTGTGTTGAGATTTTAAATAAGCCCCCATCACCAGTCCGGGGGGATCTAAGGAAGCGGTCGGTAGCACCATTATCGACTCCTTCTAAAACGAAACGATTGAGAAGTGCTACAAAATCTAGAGATGTTGAAAGAGGTAGCCAATCTAAGGATACAAGCCTTGAAATGCCAGTGTTTTCATCTTCCCGGCAAGATTTCCTTGATTTCTCTCCTGGGACCAGTGGGTTTAAGGCTCTGAAAGAAGCTGAGAAGTTCAGCTCTGAAAATCCCTTTTTCATTGTCAAGATAAGGCAAGCTATACGTTCAAACCGTAATTTTCCAGCTTCCTTTTTCATAAAATACTTTAAAAATGAGGAGCAGAAAGTAAAGATAAGGTTTGAGGGGAAGTTGTTTCCTGCAAAGTTGCGCTATTATCGACAAAATTCTACTGCCTTTATCTCTTCTGGATGGCTCCAATTTGCTCAAGCAAGTAAATTACAACCTGGGGATGTTACTGTGTTTGAGCTCGTCGATAGAGACGATCCGGTGTTTGAAACTCATATTTATAGAGCCAAAGCTTTCAAGTCATGGTCCTGTGGCTTTCAATCTCTAAAAGCAGCTCGGAATTTCAAGTCAGAAAATCCCTCTTTCATGGTAAAGATCACACAAACAAATCTACCAAGAACAACTGCTGTCATACCAGTTCCCTTCTTCACAAAGTATTTTGCAAAGAAGAAGCCGAATATACATATAAAGTTGAGAAACAAGTTGTTGGCAGCAAAGTTGCTCTATTATCCATCATCTTCTGCTGCCTATATCTCTGCCGGTTGGCAAGCTTTTGTTGCTGCCAGTAATTTAAAGGCTGGAGATGTTTGTGTCTTTGAGCTTGTCAATGAAAAAGATCGAGTGCTCGATGTTCATATTTATAGAGCCGGTCGTTTGTTAAGCTTTTAG 1308 0.3983 MASTSFQPKNKSPSTVISFFKILLSKSLQAGTLKIPRKFSRIYGGGVPNPVYLKLPDGTQWKIDWTNHNGEIIFENGWKEFAAYYSLDQGHLLWFDYKKTSLFEVHIFDMSCLEINYPPYDHTDDDCVEILNKPPSPVRGDLRKRSVAPLSTPSKTKRLRSATKSRDVERGSQSKDTSLEMPVFSSSRQDFLDFSPGTSGFKALKEAEKFSSENPFFIVKIRQAIRSNRNFPASFFIKYFKNEEQKVKIRFEGKLFPAKLRYYRQNSTAFISSGWLQFAQASKLQPGDVTVFELVDRDDPVFETHIYRAKAFKSWSCGFQSLKAARNFKSENPSFMVKITQTNLPRTTAVIPVPFFTKYFAKKKPNIHIKLRNKLLAAKLLYYPSSSAAYISAGWQAFVAASNLKAGDVCVFELVNEKDRVLDVHIYRAGRLLSF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g03000 435 SMART B3_2 216 310 IPR003340 GO:0003677
Adu10g03000 435 SMART B3_2 19 111 IPR003340 GO:0003677
Adu10g03000 435 SMART B3_2 335 430 IPR003340 GO:0003677
Adu10g03000 435 Gene3D - 13 112 IPR015300 -
Adu10g03000 435 Pfam B3 DNA binding domain 229 309 IPR003340 GO:0003677
Adu10g03000 435 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Adu10g03000 435 Pfam B3 DNA binding domain 338 429 IPR003340 GO:0003677
Adu10g03000 435 ProSiteProfiles B3 DNA-binding domain profile. 214 310 IPR003340 GO:0003677
Adu10g03000 435 MobiDBLite consensus disorder prediction 160 174 - -
Adu10g03000 435 CDD B3_DNA 333 428 IPR003340 GO:0003677
Adu10g03000 435 SUPERFAMILY DNA-binding pseudobarrel domain 210 310 IPR015300 -
Adu10g03000 435 CDD B3_DNA 215 308 IPR003340 GO:0003677
Adu10g03000 435 Gene3D - 199 312 IPR015300 -
Adu10g03000 435 Gene3D - 319 430 IPR015300 -
Adu10g03000 435 ProSiteProfiles B3 DNA-binding domain profile. 334 430 IPR003340 GO:0003677
Adu10g03000 435 CDD B3_DNA 18 109 IPR003340 GO:0003677
Adu10g03000 435 PANTHER B3 DOMAIN-CONTAINING 320 429 - -
Adu10g03000 435 PANTHER B3 DOMAIN-CONTAINING 13 309 - -
Adu10g03000 435 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 309 - -
Adu10g03000 435 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 320 429 - -
Adu10g03000 435 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Adu10g03000 435 MobiDBLite consensus disorder prediction 138 179 - -
Adu10g03000 435 SUPERFAMILY DNA-binding pseudobarrel domain 328 429 IPR015300 -
Adu10g03000 435 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g03000 Adu-Chr10 106055869 106058441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g03000 298 433 B3 DNA Binding Superfamily AT3G18990 31.206 1.10e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu10g03000 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g03000 - - adu:107471605 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g03000 10 106055869 106058441 Adu10g03000 10 106055869 106058441 ECH