Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02992 ATGGCTTCCTCTAGCCGTCAACAAAACAAGCATTCTCCTTCTTCTTCTACTTCTACTGGGACCAGTTTCTTTAAGATTATTCTCAGAAAAGCTCTTCAAAATGAAAACTTTAAGTTAACAAAAAAGTTCACTACACAATATGGTTCTGTCGTATCAAACCCATTGTATCTTAAGTCTCGAGATGGTATTGAATGGAAAGTCTATTGGACTAAACATGATGGTGCAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGAGTACAATATTGGAACATCTCACATTGAAGTACGCATATATGACATGAGTTGCCATGAAATAAAGTATCCTGCCAATGATCAGATCAAAGAGCAGTCGCCATGCAGGGGCCAGCAGCCGGTGAAAAGGCCAAAAGAACCAAAAATTATAGATGTGGATAGCAGTCCCAACACCCAAAACATGAGACTTAACGAGGGACAACAGAAGAAAAGATTAAATGAACCACGGTCAGGAGGAGTCCGTGGCCAACAGAGAAAAAAAATGAGAGCACTAGTGTCATCTGCTTCTAAAAGTAGACAGTTGGAAGATGACGCACAAATCAGGAATGTTGAAAGAAGTCTCAATTCACACGATATAAAATCCAAAGAGAAAAACCATGAGATGCCAGTGTCTGTCAATCGAGATTCTAATGGTAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTCCTGTTATGCCCTGTCCTACAAGACTTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATTAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGATTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTACAGGCCATCATCATGTGTTGCCTTTATATCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAGGATCCGGTGTTTGATGTTCATATTTGTCGTCGACAACGCCGCGAATCACTTTCCAAACCAGTGACTCGTGTGATTCAGCTCCCGAAAGAAGCTAAGGAGCTCAACTCACAGAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTTTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAATTACAGTTTGGAAAGGAGTCGTGGCCTGCTACAATTATCTACAATCCGTCATCGAAAAACAGCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGTTGGAAATGTTTGTATTTTTGAGCTCATCAATGGAAAAGATCTGTTTGATGTTCATATCTGTAGAGCCCAATGCTAG 1479 0.3854 MASSSRQQNKHSPSSSTSTGTSFFKIILRKALQNENFKLTKKFTTQYGSVVSNPLYLKSRDGIEWKVYWTKHDGAILFKKGWKEFVAYYSLDHGHLLWFEYNIGTSHIEVRIYDMSCHEIKYPANDQIKEQSPCRGQQPVKRPKEPKIIDVDSSPNTQNMRLNEGQQKKRLNEPRSGGVRGQQRKKMRALVSSASKSRQLEDDAQIRNVERSLNSHDIKSKEKNHEMPVSVNRDSNGKRNRRRKDSESPVMPCPTRLESLKEAKKFKWEKPSFIIKITQRSQTRAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASKLQAGDVCLFKLINRKDPVFDVHICRRQRRESLSKPVTRVIQLPKEAKELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPSSKNSFISAGWSSFARASKLEVGNVCIFELINGKDLFDVHICRAQC 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02992 492 CDD B3_DNA 395 489 IPR003340 GO:0003677
Adu10g02992 492 MobiDBLite consensus disorder prediction 1 20 - -
Adu10g02992 492 ProSiteProfiles B3 DNA-binding domain profile. 314 368 IPR003340 GO:0003677
Adu10g02992 492 SMART B3_2 23 116 IPR003340 GO:0003677
Adu10g02992 492 SMART B3_2 273 368 IPR003340 GO:0003677
Adu10g02992 492 SMART B3_2 397 491 IPR003340 GO:0003677
Adu10g02992 492 ProSiteProfiles B3 DNA-binding domain profile. 22 116 IPR003340 GO:0003677
Adu10g02992 492 MobiDBLite consensus disorder prediction 235 249 - -
Adu10g02992 492 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 16 366 - -
Adu10g02992 492 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 377 490 - -
Adu10g02992 492 MobiDBLite consensus disorder prediction 200 229 - -
Adu10g02992 492 MobiDBLite consensus disorder prediction 151 165 - -
Adu10g02992 492 PANTHER B3 DOMAIN-CONTAINING 377 490 - -
Adu10g02992 492 PANTHER B3 DOMAIN-CONTAINING 16 366 - -
Adu10g02992 492 CDD B3_DNA 23 114 IPR003340 GO:0003677
Adu10g02992 492 CDD B3_DNA 271 366 IPR003340 GO:0003677
Adu10g02992 492 Gene3D - 15 117 IPR015300 -
Adu10g02992 492 MobiDBLite consensus disorder prediction 129 253 - -
Adu10g02992 492 SUPERFAMILY DNA-binding pseudobarrel domain 390 490 IPR015300 -
Adu10g02992 492 SUPERFAMILY DNA-binding pseudobarrel domain 17 116 IPR015300 -
Adu10g02992 492 Gene3D - 382 491 IPR015300 -
Adu10g02992 492 Gene3D - 255 369 IPR015300 -
Adu10g02992 492 Pfam B3 DNA binding domain 284 368 IPR003340 GO:0003677
Adu10g02992 492 Pfam B3 DNA binding domain 410 490 IPR003340 GO:0003677
Adu10g02992 492 Pfam B3 DNA binding domain 24 112 IPR003340 GO:0003677
Adu10g02992 492 ProSiteProfiles B3 DNA-binding domain profile. 396 491 IPR003340 GO:0003677
Adu10g02992 492 SUPERFAMILY DNA-binding pseudobarrel domain 267 367 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02992 Adu-Chr10 105984519 105987738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02992 387 482 B3 DNA Binding Superfamily AT3G18990 29.897 5.63e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu10g02992 B3 3.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02992 - - adu:107471893 994.186