Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02990 ATGCCAAACAAGTTCTGTAGGAAATATGGTGGAGATATGCCAAATCCAGTGAAACTCCTGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTGACAAGGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAACGGAACTTCTAACATCAAAGTAAACATATTCGACATGACTGCCCTCGAAATTGATTATCCTTCCAATGGTCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGACCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACAAGCAAAAAAATGAAAAGTGCCATCAAAACTAAAGATAAAGATAAAAATCCCAATACACAAAACTTGAAGCTGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAAGGTGCCAGACCAGATATGGATGTTGTTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATCAAGATTAAGCAAAAGCACCAAACAGGTTTACCAGCAAATCTTCCAGTTTGTTTCTTCAGGATGTACTTCGAGAACACTAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCCATTATCCAAATAGGAAGAATGCCCTTATCTCTCATTGGCGCTTGTTCGTTGAAGAAAATAACTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCGTTAACAGACAAGGTCCAGAACTTAAGGTTCATATTCGTCGAAGCCATGATTAG 867 0.4048 MPNKFCRKYGGDMPNPVKLLPPDGTEWRIDWTNRDGEILFDKGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMTALEIDYPSNGRIGDDNSVEILDEPPPRRDRGRPKKKVIAEPKQSRASTSKKMKSAIKTKDKDKNPNTQNLKLHVENEKDGQSEETADLKLPIIQGARPDMDVVREAKKFKSKNPSFVIKIKQKHQTGLPANLPVCFFRMYFENTKQYAILRVGKKQWHATLIHYPNRKNALISHWRLFVEENNLKAGDVCIFELVNRQGPELKVHIRRSHD 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02990 288 Pfam B3 DNA binding domain 209 286 IPR003340 GO:0003677
Adu10g02990 288 Pfam B3 DNA binding domain 2 75 IPR003340 GO:0003677
Adu10g02990 288 ProSiteProfiles B3 DNA-binding domain profile. 232 287 IPR003340 GO:0003677
Adu10g02990 288 SUPERFAMILY DNA-binding pseudobarrel domain 1 84 IPR015300 -
Adu10g02990 288 SMART B3_2 193 287 IPR003340 GO:0003677
Adu10g02990 288 SMART B3_2 2 77 IPR003340 GO:0003677
Adu10g02990 288 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 286 - -
Adu10g02990 288 CDD B3_DNA 1 75 IPR003340 GO:0003677
Adu10g02990 288 ProSiteProfiles B3 DNA-binding domain profile. 1 77 IPR003340 GO:0003677
Adu10g02990 288 MobiDBLite consensus disorder prediction 93 118 - -
Adu10g02990 288 MobiDBLite consensus disorder prediction 130 161 - -
Adu10g02990 288 Gene3D - 1 78 IPR015300 -
Adu10g02990 288 SUPERFAMILY DNA-binding pseudobarrel domain 186 286 IPR015300 -
Adu10g02990 288 Gene3D - 174 288 IPR015300 -
Adu10g02990 288 MobiDBLite consensus disorder prediction 90 161 - -
Adu10g02990 288 CDD B3_DNA 209 285 IPR003340 GO:0003677
Adu10g02990 288 PANTHER B3 DOMAIN-CONTAINING 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02990 Adu-Chr10 105980163 105981250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02990 1 288 B3 DNA Binding Superfamily AT3G18990 25.938 5.92e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu10g02990 B3 1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02990 - - aip:107621185 548.895