Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02988 ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTTAGACAAAGCCTTGAAGATGGAAATCTTACCATACCAAAAACGTTCAGTATGGAATTTGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATCATGGTGGCATTCTATTTGAAAATGGTTGGAAAGAATTTGCCTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTCTAACATTCAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTGAAGGAGTGAAATGGTGCCCCAAAATAGACTATCCTTCCAAGGACCACATTGATGATGGCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGTGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGCGCGCTGAAATACAATATCCTTCCAAGCACCACATCGATGAGGACAACATGGCTAAGCCACGAAGAGGCCGAGGCCGGCCGAGGAAATCAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAGAGCAGTGAAATGGTGCCCTGAAATAGACTATGCTTCCAAGGACCACATTAATGATGCCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATCACAACATGGTTAAGGTTGGGAATGAACCACCACGAAGAGGCCGAGGCCGGCCAAGAAAAACAGAGAAAGCAGCACCGAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGGCCACATTGATGATGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGGAAGCAGCAGCAGAAGTATCATTTCCTTCTACAAGTAAAATATTGAGTAGTTCTGTCAAAACTGGAGATGTGGAGAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTGAATCTGAATGA 1443 0.447 MASSSFQVTCFYKIVLRQSLEDGNLTIPKTFSMEFGDGVPNPVYLKPPDGTAWKIDWSEYHGGILFENGWKEFASYYSLDHGHMLWFEYNETSNIQVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSASTSKMFTSSAKTEGVKWCPKIDYPSKDHIDDGNMVKVENEPPRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWRAEIQYPSKHHIDEDNMAKPRRGRGRPRKSEKAAPKTPSPCTSKMFTSSAKTRAVKWCPEIDYASKDHINDANMVKVENEPPRRGRGRPRKTEKAAPKTPSASTSKMFTSSAKTRCPEIDYPSKDHIDDHNMVKVGNEPPRRGRGRPRKTEKAAPKTPSACTSKMFTSSAKTRCPEIDYPSKGHIDDDNMVKVENEPPRRGRGRPRKKLEAAAEVSFPSTSKILSSSVKTGDVEKGPDKQNWMQCCKNEEASESE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02988 480 Gene3D - 4 104 IPR015300 -
Adu10g02988 480 PRINTS AT-hook-like domain signature 189 199 IPR017956 GO:0003677
Adu10g02988 480 PRINTS AT-hook-like domain signature 306 316 IPR017956 GO:0003677
Adu10g02988 480 PRINTS AT-hook-like domain signature 244 255 IPR017956 GO:0003677
Adu10g02988 480 MobiDBLite consensus disorder prediction 174 201 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 219 246 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 174 275 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 402 436 - -
Adu10g02988 480 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 195 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 290 320 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 290 480 - -
Adu10g02988 480 CDD B3_DNA 10 101 IPR003340 GO:0003677
Adu10g02988 480 SMART B3_2 11 103 IPR003340 GO:0003677
Adu10g02988 480 MobiDBLite consensus disorder prediction 126 152 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 204 218 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 381 395 - -
Adu10g02988 480 SUPERFAMILY DNA-binding pseudobarrel domain 4 103 IPR015300 -
Adu10g02988 480 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Adu10g02988 480 PANTHER B3 DOMAIN-CONTAINING 8 195 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 343 378 - -
Adu10g02988 480 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Adu10g02988 480 SMART AT_hook_2 246 258 IPR017956 GO:0003677
Adu10g02988 480 SMART AT_hook_2 366 378 IPR017956 GO:0003677
Adu10g02988 480 SMART AT_hook_2 308 320 IPR017956 GO:0003677
Adu10g02988 480 SMART AT_hook_2 424 436 IPR017956 GO:0003677
Adu10g02988 480 SMART AT_hook_2 189 201 IPR017956 GO:0003677
Adu10g02988 480 MobiDBLite consensus disorder prediction 261 275 - -
Adu10g02988 480 MobiDBLite consensus disorder prediction 322 337 - -
Adu10g02988 480 PRINTS High mobility group protein (HMGY) signature 244 256 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Adu10g02988 480 PRINTS High mobility group protein (HMGY) signature 297 316 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02988 Adu-Chr10 105952339 105954965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02988 11 228 B3 DNA Binding Superfamily AT3G18990 25.523 1.18e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu10g02988 B3 4.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02988 - - adu:107471693 698.353