Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02987 ATGCCAAATCCAGTGAAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTGACAAGGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAACGGAACTTCTAACATCAAAGTAAACATATTCGACATGACTGCCCTCGAAATTGATTATCCTTCCAATGGTCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGACCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACAAGCAAAAAAATGAAAAGTGCCATCAAAACTAAAGATAAAGATAAAAATCCCAATACACAAAACTTGAAGATGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATCAAGATTAAGCAAAAGCAACAAACAGGATCACCGGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACAATGATCTATTATCCAAATAGGAAGAATGCCCTTATCTCTAATTGGCGCTTGTTCGTTAAAGAAAATAACTTAAAAGCCGGAAATGTTTGCATCTTTGAGCTCATTAACAGACAAGATCCAGAACTTAAGGTTCATATTCGTCGAAGCCATGATTAG 831 0.3983 MPNPVKLQPPDGTEWRIDWTNRDGEILFDKGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMTALEIDYPSNGRIGDDNSVEILDEPPPRRDRGRPKKKVIAEPKQSRASTSKKMKSAIKTKDKDKNPNTQNLKMHVENEKDGQSEETADLKLPIIQRARPDMDVIREAKKFKSKNPSFVIKIKQKQQTGSPANLPVCFFRMYFENTKQYAILRVGKKQWHATMIYYPNRKNALISNWRLFVKENNLKAGNVCIFELINRQDPELKVHIRRSHD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02987 276 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Adu10g02987 276 SMART B3_2 181 275 IPR003340 GO:0003677
Adu10g02987 276 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 274 - -
Adu10g02987 276 Pfam B3 DNA binding domain 197 274 IPR003340 GO:0003677
Adu10g02987 276 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
Adu10g02987 276 Gene3D - 1 66 IPR015300 -
Adu10g02987 276 Gene3D - 162 276 IPR015300 -
Adu10g02987 276 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Adu10g02987 276 MobiDBLite consensus disorder prediction 81 106 - -
Adu10g02987 276 MobiDBLite consensus disorder prediction 118 134 - -
Adu10g02987 276 SUPERFAMILY DNA-binding pseudobarrel domain 174 274 IPR015300 -
Adu10g02987 276 MobiDBLite consensus disorder prediction 78 134 - -
Adu10g02987 276 ProSiteProfiles B3 DNA-binding domain profile. 220 275 IPR003340 GO:0003677
Adu10g02987 276 PANTHER B3 DOMAIN-CONTAINING 2 274 - -
Adu10g02987 276 CDD B3_DNA 197 273 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02987 Adu-Chr10 105950481 105951533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02987 5 276 B3 DNA Binding Superfamily AT3G18990 26.645 5.56e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu10g02987 B3 3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02987 - - aip:107621185 523.857