Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02972 ATGTCTCTGCATTCATCAACAGGTTTCTTTAAGATACTTATACACAACACGTTTAAAAAAGAATTGATGATTCCCAAGAGTTTTGTGAGAAAATATTGGGAAAGGATATCAAATCCTATAATACTAAAGCTACCAAATAACAGAGAACAAGAAGTATATTGGAGTCAAAGGAAAAATGATGAAGTTTGGTTGGAAAATAACTGGGAAAAAGTTGTAAAGTTGTGTCACTTGGAATATGAATTTTTGTTAACATTTGAATACAAAGAAACATCATCATGTTTTGAGCTCAAAGTATATGATAAGAGTGCTTCACAAATAAACTACCATTCAGATTGTGGAGTTCATGAAACTAATCATGATTATATTGTTGTTGATGATATTCAAAAGGAACCAAAGAGAAAGAGAACCAACAAAGCAGGAATTAGAAAAAGCATGCTCAATAATGTTAGGGAGAAAATAGAAATGGCTGAAGCCTTATCTACAAAGCTGAAAAATCCTTCTTTTTTTCTTGTTCTGAAACCTTCATATGTTCATGGCAATGCTAATCTGCTGCATATACCATCTTCATTTTCAAGACAATACTTAAATGGATTAAAAGGAAGTGGCACGATTTGGGCTAGTGACAATGAAGACTCGAATTGGTCCATTAAATACAGTTTCTCTAATATTAGAAAACGAACTACAATCCATGGTGGTTGGAACAAATTTTGCAAGGAAAATAAGCTACAAGTTGGTGATGTTTGTGTCTTTGAAATGATGACTCAAGTCAACCCCCATTCCTTCAAAATTCACATCATTCCAGTCACACAACAATCACCACGAACTCCTCCTCATCAATTTCAAGCTGATGAGCAAAACAAAGATAATGATGAAGTTACTAGAAAGAGAAAAAGAAACGATAGGGTTTCAGGAAGATCTCCACAATGTCACGTGCTTCAGAAATCTGAAAGTCCCAACAGGCAGACTAATAATCAATTCGAGATTCGAATATCAAAATCTAAATTAAAGCAATTCACTTCATCAGTATTCGTACCCATACCAAAAAAATTTATTCGGAGGAATGAAAGATGTCTTGGGAAAAATGTGACACTTAAATTTGGAAGAGATTCGTGGACTGTGAAAGTGGTGAATGGTGGATCGTTTAGCAAAGGTTGGGTCCAGTTTGCAACAGAATGCAAATTAGTTGTTGGAGACATTTGTCGATTTAAACTGAGTGACCGTAAAAATTTAGTGTTCCATGTTTCCATTTTTAAGGAGCATCGCTCATGA 1269 0.3444 MSLHSSTGFFKILIHNTFKKELMIPKSFVRKYWERISNPIILKLPNNREQEVYWSQRKNDEVWLENNWEKVVKLCHLEYEFLLTFEYKETSSCFELKVYDKSASQINYHSDCGVHETNHDYIVVDDIQKEPKRKRTNKAGIRKSMLNNVREKIEMAEALSTKLKNPSFFLVLKPSYVHGNANLLHIPSSFSRQYLNGLKGSGTIWASDNEDSNWSIKYSFSNIRKRTTIHGGWNKFCKENKLQVGDVCVFEMMTQVNPHSFKIHIIPVTQQSPRTPPHQFQADEQNKDNDEVTRKRKRNDRVSGRSPQCHVLQKSESPNRQTNNQFEIRISKSKLKQFTSSVFVPIPKKFIRRNERCLGKNVTLKFGRDSWTVKVVNGGSFSKGWVQFATECKLVVGDICRFKLSDRKNLVFHVSIFKEHRS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02972 422 PANTHER B3 DOMAIN-CONTAINING 274 419 - -
Adu10g02972 422 PANTHER B3 DOMAIN-CONTAINING 4 120 - -
Adu10g02972 422 PANTHER B3 DOMAIN-CONTAINING 137 266 - -
Adu10g02972 422 SMART B3_2 9 102 IPR003340 GO:0003677
Adu10g02972 422 SMART B3_2 338 420 IPR003340 GO:0003677
Adu10g02972 422 SMART B3_2 168 269 IPR003340 GO:0003677
Adu10g02972 422 MobiDBLite consensus disorder prediction 272 324 - -
Adu10g02972 422 SUPERFAMILY DNA-binding pseudobarrel domain 9 109 IPR015300 -
Adu10g02972 422 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 274 419 - -
Adu10g02972 422 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 137 266 - -
Adu10g02972 422 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 120 - -
Adu10g02972 422 SUPERFAMILY DNA-binding pseudobarrel domain 339 418 IPR015300 -
Adu10g02972 422 CDD B3_DNA 9 100 IPR003340 GO:0003677
Adu10g02972 422 MobiDBLite consensus disorder prediction 281 304 - -
Adu10g02972 422 Gene3D - 147 270 IPR015300 -
Adu10g02972 422 Gene3D - 308 420 IPR015300 -
Adu10g02972 422 ProSiteProfiles B3 DNA-binding domain profile. 169 269 IPR003340 GO:0003677
Adu10g02972 422 MobiDBLite consensus disorder prediction 306 324 - -
Adu10g02972 422 Gene3D - 2 103 IPR015300 -
Adu10g02972 422 SUPERFAMILY DNA-binding pseudobarrel domain 164 262 IPR015300 -
Adu10g02972 422 Pfam B3 DNA binding domain 343 418 IPR003340 GO:0003677
Adu10g02972 422 Pfam B3 DNA binding domain 168 266 IPR003340 GO:0003677
Adu10g02972 422 Pfam B3 DNA binding domain 9 98 IPR003340 GO:0003677
Adu10g02972 422 CDD B3_DNA 166 267 IPR003340 GO:0003677
Adu10g02972 422 ProSiteProfiles B3 DNA-binding domain profile. 329 420 IPR003340 GO:0003677
Adu10g02972 422 CDD B3_DNA 346 418 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02972 Adu-Chr10 105818468 105821329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02972 9 414 B3 DNA Binding Superfamily AT4G00260 25.355 6.46e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu10g02972 B3 9.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02972 - - aip:110267705 783.482