Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02971 ATGGCTTTCTATAACATGTTTTTTAAGGTTCTTATTGATCCCAACCAACTGAGGGAAAACCAACCAAAATGGAAGAAGCCGTCATCACTTCATGAATTGGAGATACCACCAAAtgtgagaggtttctataacgatgatcatcatcaaggtgcaaatgaaaatgatgatgatggtggtgatGATGATGATGACTCTATTGAGATTATTGCTGAAGAGCCAGAACAATTCAACAACAGAAGCAGAGAAGGAACTTGTAAAAGCATGCTCAAAGAAGTTCATGAAAatcatgactatattgtaattgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgATGATGAATGGCACTCTAAACCACTCTTGATGAGAAAGAGAACCAAAACAAAAGGAACAAGTAAAAGCATGCTCAAAAAAGTGAGGAGAAATATGAAATGTGATGATAACCGGAGCAAGGCACTGGAGAGGGCTGAAGCCATCTCTTCAAAGCTGAAAAATCCTTCTTTTGTTCGTGATTTGAAGCGTTCATATGTTGATTACGGGATCATGCAAATACCATGTTCATTTTCGGAACAATATTTATATAGATTAAAAGGAAGTGGCACAATTTGGGTTAGTGATAATGAAGACATTAAATGGAGCATCAAATACAGTTACAGTGATTCTCAGAACAGAACAAGTATTTATGGTGATTGGCACAAATTTAGAAAAGAAAACGAGTTAGAAGTTGGTGATGTTTGTGTATTCGAAATGATGACGGAAGTTGAACCCGTTTCCTTCAAAATTTACATCATCCGAGTCAGACAAGAATCATCATCATCTTATCCTCATCAATTCCAAGAGTCCGAAAGGCCCAATAGGCAGGCGAATAATCAATTCGAGCTTCTGATAACAAAATCAAAATTGAAGGCATCAACACTCGTGAAAATACCAAGAAAGTTTATTCGCCAGAATGAAAGATGTGTTGGAAAAGATGTGACACTTAAAGTTGGAAAAGAATTGTGGACTGTGAAAGTGTTGAATTCTGagacaaatAGAAATCATAATGATGATGAAGACGACGAGGATCAATCTATTGAGATAGTTAATGAAAAGCAAAAACAATTCAGAAGAAGAAGTAGAACAGGAGCTTGTAGTGAAAGACTTAAAAGAGTTCAAAGTGATTCAAAAATTGCTCCGAAGAAGGATAATAAACCGTTGGCAGTAGAATTTCAAAGCAAAAAAGCATTGATGAATAGAGCCCAAGTTTTCTGCCTAAACTCAAAATATCCTTGCTTCATACTAGAAATGCAAAGATCTTATATTTCACATGATCTACTGCGTATACCAATCGAGTTTTCGAGAGTGCACTTACATGGGTTAGAGGGAAAAGCCAAAATTGGAGTTAATGGTAACATGAGATGGGATATTGTGTTAAGATTTTGTGGTGATAGAGCTACTTTCAGTGCTGGTTGGAGAAATGTTTCCAATGATTTTGGCTTAAAATTTGGTGATGTTTGTGTTTTTGAGATGATTAAGGACACTCCACTTTCCTTCAACATTTTTCTCATCAGACCCAAACAGCAACCAATAAGCCTTTGCCACCAAAACTTGCCAGACCATTATCAAAGCCTCCCTCAGCCAAAGAAAGTGCAAGGGCAAACCAGTCAATCTAGAAAAAGAAAAAGAAGCAGTGATGGAACTTTCATGAGAATCCGTGACAGAGCTCCCAACATGCAGGATGATGAATTTATCCTTGAAATTAAAGATTATCACCTTAGTGGATCTACTTTCATACCAAATGGATTTTGTCGTAGGCACAAAGATTGTCTTGGAAAACTTGTGAATTTGAAATTTGGAGAAATTTTACGGCCAGTGAAATTGTTAGCACGCGGTGCATTTTCTGAAGGATGGTTGAATTTTGCAAAAGAATGCAAATTGAATGCTGGTGACTTTTGTTCCTTCAAACTTGTTGATGACCAAAATCCTATCTTTGAAGTTTCAACTGTAAAATCAAAATAG 2016 0.3403 MAFYNMFFKVLIDPNQLRENQPKWKKPSSLHELEIPPNVRGFYNDDHHQGANENDDDGGDDDDDSIEIIAEEPEQFNNRSREGTCKSMLKEVHENHDYIVIDDDDDDDDDDDDDDDDDDEWHSKPLLMRKRTKTKGTSKSMLKKVRRNMKCDDNRSKALERAEAISSKLKNPSFVRDLKRSYVDYGIMQIPCSFSEQYLYRLKGSGTIWVSDNEDIKWSIKYSYSDSQNRTSIYGDWHKFRKENELEVGDVCVFEMMTEVEPVSFKIYIIRVRQESSSSYPHQFQESERPNRQANNQFELLITKSKLKASTLVKIPRKFIRQNERCVGKDVTLKVGKELWTVKVLNSETNRNHNDDEDDEDQSIEIVNEKQKQFRRRSRTGACSERLKRVQSDSKIAPKKDNKPLAVEFQSKKALMNRAQVFCLNSKYPCFILEMQRSYISHDLLRIPIEFSRVHLHGLEGKAKIGVNGNMRWDIVLRFCGDRATFSAGWRNVSNDFGLKFGDVCVFEMIKDTPLSFNIFLIRPKQQPISLCHQNLPDHYQSLPQPKKVQGQTSQSRKRKRSSDGTFMRIRDRAPNMQDDEFILEIKDYHLSGSTFIPNGFCRRHKDCLGKLVNLKFGEILRPVKLLARGAFSEGWLNFAKECKLNAGDFCSFKLVDDQNPIFEVSTVKSK 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02971 671 ProSiteProfiles B3 DNA-binding domain profile. 173 273 IPR003340 GO:0003677
Adu10g02971 671 MobiDBLite consensus disorder prediction 542 568 - -
Adu10g02971 671 MobiDBLite consensus disorder prediction 128 144 - -
Adu10g02971 671 SUPERFAMILY DNA-binding pseudobarrel domain 170 263 IPR015300 -
Adu10g02971 671 Pfam B3 DNA binding domain 181 271 IPR003340 GO:0003677
Adu10g02971 671 Pfam B3 DNA binding domain 432 519 IPR003340 GO:0003677
Adu10g02971 671 SUPERFAMILY DNA-binding pseudobarrel domain 581 659 IPR015300 -
Adu10g02971 671 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 349 523 - -
Adu10g02971 671 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 552 668 - -
Adu10g02971 671 MobiDBLite consensus disorder prediction 97 144 - -
Adu10g02971 671 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 46 272 - -
Adu10g02971 671 PANTHER B3 DOMAIN-CONTAINING 46 272 - -
Adu10g02971 671 CDD B3_DNA 172 271 IPR003340 GO:0003677
Adu10g02971 671 ProSiteProfiles B3 DNA-binding domain profile. 430 525 IPR003340 GO:0003677
Adu10g02971 671 Gene3D - 407 526 IPR015300 -
Adu10g02971 671 Gene3D - 151 275 IPR015300 -
Adu10g02971 671 Gene3D - 569 671 IPR015300 -
Adu10g02971 671 PANTHER B3 DOMAIN-CONTAINING 349 523 - -
Adu10g02971 671 PANTHER B3 DOMAIN-CONTAINING 552 668 - -
Adu10g02971 671 CDD B3_DNA 429 520 IPR003340 GO:0003677
Adu10g02971 671 SUPERFAMILY DNA-binding pseudobarrel domain 424 520 IPR015300 -
Adu10g02971 671 MobiDBLite consensus disorder prediction 20 65 - -
Adu10g02971 671 MobiDBLite consensus disorder prediction 100 120 - -
Adu10g02971 671 SMART B3_2 582 666 IPR003340 GO:0003677
Adu10g02971 671 SMART B3_2 174 273 IPR003340 GO:0003677
Adu10g02971 671 SMART B3_2 431 523 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02971 Adu-Chr10 105807350 105815773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02971 426 515 B3 DNA Binding Superfamily AT5G18090 34.066 5.95e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu10g02971 B3 8.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02971 - - aip:107621190 496.893