Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02780 ATGGGAGCATATGGAAAGGTGTACAAGTGCAGTTTGTATCATACAACTGTTGCTGTTAAAGTTCTTCACCCTAATAGGGGCCACAATAGCAAGCAATTCCAGCAAGAGCTTGAGATACTTAGCAGAACTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGAGCATGGATGCCTTGTGTATGAATATATGGAGAATGGTAACTTGGACGATAGATTACTCCGGAAAAACAATGCCACCCCTATTCCATGGTTTGAGAGGTATCGAATAGCATGGGAAGTTGCATCAGCTCTATCCTTTCTTCACAGTTCAAAGCCAAAACCAATCATCCATCGTGATTTGAAGCCAGCGAACATCCTTCTTGGTCGTAACCTTGTCAGCAAGATTGGTGATATTGGCCTTTCGACAATGCTTCAGTCAGATAATTTATCCACCATGTACAAGGACACTGAGCCTGTTGGGACACTCTGCTACATAGACCCTGAGTATCAAAGAAATGGATTGATATCACCAAAATCAGATGTTTATGCTTTGGGAATAGTTATATTACAGTTATTGACTGCAAAACCAGCCATAGGAATTACTCATGTGGTTGAAACAGCAATTGGTGCCGGGAAGTTGACGGATATATTGGATCCAGAGGCAGGAAGTTGGCCATTTCAAGAGACATTAGAATTAGCTCAATTAGGACTGAGCTGTGCTGAACTTCGGCGAATAGACCGGCCTGATTTGAAAGATCAAGTTCTTCCTACACTAGAGAGATTGAAAGAAATTGCTGATAGGACTCAACAATCTCCTTCAATAGTATTTGTTAGATCCAGACCTCCCAATCACTTTATCTGTCCAATACTTCAGGACGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATTCGTATGATCGTAAAGCAATTGAAAAGTGGTTTCAAGAGAATGACAAATCACCAATGACAAATATGGCCTTACCACACAAGCATCTAATTCCTAATTACACTCTCCTGTCAGCAATTATGGAATGGAAGTCTCAATAG 1038 0.4143 MGAYGKVYKCSLYHTTVAVKVLHPNRGHNSKQFQQELEILSRTRHPNLLLLLGACPEHGCLVYEYMENGNLDDRLLRKNNATPIPWFERYRIAWEVASALSFLHSSKPKPIIHRDLKPANILLGRNLVSKIGDIGLSTMLQSDNLSTMYKDTEPVGTLCYIDPEYQRNGLISPKSDVYALGIVILQLLTAKPAIGITHVVETAIGAGKLTDILDPEAGSWPFQETLELAQLGLSCAELRRIDRPDLKDQVLPTLERLKEIADRTQQSPSIVFVRSRPPNHFICPILQDVMDDPCVAADGYSYDRKAIEKWFQENDKSPMTNMALPHKHLIPNYTLLSAIMEWKSQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02780 345 SMART serkin_6 2 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu10g02780 345 Gene3D Transferase(Phosphotransferase) domain 1 67 274 - -
Adu10g02780 345 SUPERFAMILY Protein kinase-like (PK-like) 2 248 IPR011009 -
Adu10g02780 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 345 IPR013083 -
Adu10g02780 345 CDD RING-Ubox_WDSUB1_like 281 321 - -
Adu10g02780 345 SUPERFAMILY RING/U-box 274 344 - -
Adu10g02780 345 SMART Ubox_2 280 342 IPR003613 GO:0004842|GO:0016567
Adu10g02780 345 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 1 343 - -
Adu10g02780 345 Pfam U-box domain 278 344 IPR003613 GO:0004842|GO:0016567
Adu10g02780 345 ProSiteProfiles U-box domain profile. 276 345 IPR003613 GO:0004842|GO:0016567
Adu10g02780 345 ProSiteProfiles Protein kinase domain profile. 1 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu10g02780 345 Gene3D Phosphorylase Kinase; domain 1 1 66 - -
Adu10g02780 345 PANTHER OS02G0152300 PROTEIN 1 343 - -
Adu10g02780 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Adu10g02780 345 Pfam Protein tyrosine and serine/threonine kinase 2 246 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02780 Adu-Chr10 104349638 104351564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02780 1 344 U-box Gene Family AT5G61550 68.012 8.68e-173 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Adu10g02780 PK_Tyr_Ser-Thr 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02780 - - gmx:100818628 596.66