Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02572 ATGTCGAAATCGATCACGCATCTGATTTGTTGGAAGTTTGAGGGAAGAAAGTATGAGATTGCCCAAAAGTTTGATATAATTATAGTCAATCATCGATGGATTGAAGACTGCATTAAAGAAGGAAGGCGTGTGCCAGAAGAGTCATATATCTTGCAAAGTGGACATGAAGTTGGGCCATTGTTACTGGAAGTTCCAATCAGTGTTCCAGCAACTAGATTGACAAAAAATAAAGTTATAACTGATCAAATATATGATATTGACTCTGGAGAGCAAACAACTGAGATCAGTTTTGGAGCTTCAGAAAATTTTGTTTGGGAAGATTTAAATACAAAGCATGACAAGTCCAGTGCTTATCCTTCTAGACGGTCAAGGAAAGGAAAAAGAAGTATCTGTGCTGGTAATAATGGAGGTTGTACTGTGGCTGAACCTTCTCGTAAAGGCAGAAGGATTGTAAACAATATTGTTGATGAAGTGGTGTTGGACCCTTTATTGGATGTGGTCCCGGACAACCACCATAATAGATGGGATAGACGAAACCATGATGCTGCAGCTACCACTAGCCTTTGTAGTGGTGTCAATAAGGGAAATACAGTTGAAAATGGAGAAACAACAGATGCCGGATTGTCTACTCAAAATGAAACTATCAATGGAACTTCAGATAGCATTGAAGAGATCAATCATTCGAACAATGTATCAGCTCTTAGAAGTTCAACTTTCTCTGTAGAGTATCATCTACCTATGACTCAAATGTCAACAGATATATGTTCTTCTGCTGAAAAGTTCACAGATGATTGTCAGCATGAAGATGTTGCTGGCTTACCTACATCCAGTGAGTTATCCTGTGTTATCTGTCACGCAGATTTCAGCGCAACAAGGGGAATTCTTCCATGTGGACATCGATTTTGTTTTGAATGCATTCATAGTTGGGCTAATCATAGGACTTCAACGAGGAAAAATGCAACCTGTCCTTTGTGCAAGGCAAGTTTTCAGTCGATCAAGAAGGTTGAGCATGCAGATAGAATTGATCAAAAAGTATACACCCAGACAGTCCCATGTAACAATTCAGCTGAAGATGTTTTTATCGCTCCACATCAAGGATTGCCCGATTACCCTTTTGAGTCCTCAGAGGCAAACTCTTGTGTAGTTTGTGGTGGTTTGGAACCAGAGGATCTCCTTGACAGGTGTGATATCTGCCAAACACGAAGAATCCATATATATTGCCTGGACCCTCCTATAACTCCATGGATATGCAATCCCTGCAACCAACTACGGAGAAGTTACTATGATCGCTCGTATTAA 1299 0.4011 MSKSITHLICWKFEGRKYEIAQKFDIIIVNHRWIEDCIKEGRRVPEESYILQSGHEVGPLLLEVPISVPATRLTKNKVITDQIYDIDSGEQTTEISFGASENFVWEDLNTKHDKSSAYPSRRSRKGKRSICAGNNGGCTVAEPSRKGRRIVNNIVDEVVLDPLLDVVPDNHHNRWDRRNHDAAATTSLCSGVNKGNTVENGETTDAGLSTQNETINGTSDSIEEINHSNNVSALRSSTFSVEYHLPMTQMSTDICSSAEKFTDDCQHEDVAGLPTSSELSCVICHADFSATRGILPCGHRFCFECIHSWANHRTSTRKNATCPLCKASFQSIKKVEHADRIDQKVYTQTVPCNNSAEDVFIAPHQGLPDYPFESSEANSCVVCGGLEPEDLLDRCDICQTRRIHIYCLDPPITPWICNPCNQLRRSYYDRSY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02572 432 PANTHER F5A8.9 PROTEIN 104 429 - -
Adu10g02572 432 PANTHER F5A8.9 PROTEIN 1 79 - -
Adu10g02572 432 SUPERFAMILY BRCT domain 1 52 IPR036420 -
Adu10g02572 432 SUPERFAMILY FYVE/PHD zinc finger 368 423 IPR011011 -
Adu10g02572 432 ProSiteProfiles Zinc finger RING-type profile. 281 326 IPR001841 -
Adu10g02572 432 ProSiteProfiles BRCT domain profile. 1 51 IPR001357 -
Adu10g02572 432 SMART ring_2 281 325 IPR001841 -
Adu10g02572 432 Pfam twin BRCT domain 1 33 IPR001357 -
Adu10g02572 432 SUPERFAMILY RING/U-box 274 333 - -
Adu10g02572 432 MobiDBLite consensus disorder prediction 113 138 - -
Adu10g02572 432 CDD RING-HC 281 325 - -
Adu10g02572 432 ProSitePatterns Zinc finger RING-type signature. 297 306 IPR017907 -
Adu10g02572 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 364 IPR013083 -
Adu10g02572 432 MobiDBLite consensus disorder prediction 193 212 - -
Adu10g02572 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 431 IPR013083 -
Adu10g02572 432 Gene3D BRCT domain 1 56 IPR036420 -
Adu10g02572 432 Pfam Ring finger domain 280 326 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02572 Adu-Chr10 102348322 102352660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02572 5 57 Core DNA Replication Machinery Family AT4G02110 53.704 2.02e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02572 - - aip:107621679 729.554