Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02557 ATGATGAGGGAAGGAACAAACATCAATATTGGCGGGAGTTGCAGCTCCCCCAACAACTGGTCACGTGCCTGCGACACGTGCCGCTCTGCACCCTGCGTGGTGTACTGCCGCGCGGACTCTGCCTATCTCTGCTCCGCATGTGACGACAGAGTCCACGCGGCAAACAGGGTGGCGTCGAGGCACGAGCGCGTGTGGGTCTGCGAGGCCTGCGAGCGTGCTCCGGCAGCCTTCCTCTGCAAAGCCGACGCCGCCTCTCTCTGCTCCTCCTGCGACTCCGACATCCACTCCGCCAACCCCCTTGCCGGCCGCCACCACCGCGTCCCCATTCTCCCCATCTCAGGCTGCTCCTCGCTCATCCGAGAAGGAGAACAAAAAGAAGGAGAACCAGAAAGAGAAAATGATCACGTGTTTGAAATTGAAGGTACAATTAATAATCAGAATTATAACCATGGATGTGAAATGGAGGATGAGGAGTGTGAGGGTGATGATGAGGCTGAAGCTGCTTCGTGGTTGTTGCCGCATCCTATGAGGATGGGTGGTAACGATGAGAGTGATGGGTTCTTGTTTTGTGGTGGCGACGGTGACGGCGATGGTGATGAGTACTTGGAGTTTGTGGATTGTGATGATGATAATAATAATAATAATAATAACCAGTTTAGTTGTCTTGATCATGATCAAGATCAAGATATGCTGCATAACTATGGCGGCGATCATAATCAGGGAAACAACCATGACAGCGTGGTTCCGGTTCAGATGCAACAGTGTTTCGAGTTTGACTCCTCTAAAGTTGGTGCTGGATTCAGTTACAATGGTTCTCTTAGTCAAAGTGTTTCAATGTCATCCATGGAAGTTGGAGTTGTACCAGAATCAACGTTGAGTGATGTGTCAATCTCACATTCAAAGCCACAAATAGGAACAAGTGAGCAATTTCCTCCAATGCCTATGCCTTCATCACTTCTAACTCCAATGGACAGAGTAGCCAGAGTTCTAAGATACAAAGAGAAAAAGAAAACAAGAAAGTTTGAGAAGAAAATAAGATATGAATCAAGAAAGGCCTATGCAGAAACCAGGCCACGTATTAAGGGTCGTTTTGCAAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTATCATCAACCCTAATGTCAGAAGCTGGATATGGCATTGTTCCTTCCTTCTGA 1185 0.4793 MMREGTNINIGGSCSSPNNWSRACDTCRSAPCVVYCRADSAYLCSACDDRVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDSDIHSANPLAGRHHRVPILPISGCSSLIREGEQKEGEPERENDHVFEIEGTINNQNYNHGCEMEDEECEGDDEAEAASWLLPHPMRMGGNDESDGFLFCGGDGDGDGDEYLEFVDCDDDNNNNNNNQFSCLDHDQDQDMLHNYGGDHNQGNNHDSVVPVQMQQCFEFDSSKVGAGFSYNGSLSQSVSMSSMEVGVVPESTLSDVSISHSKPQIGTSEQFPPMPMPSSLLTPMDRVARVLRYKEKKKTRKFEKKIRYESRKAYAETRPRIKGRFAKRTDVEAEVDQMLSSTLMSEAGYGIVPSF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02557 394 MobiDBLite consensus disorder prediction 297 314 - -
Adu10g02557 394 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Adu10g02557 394 ProSiteProfiles CCT domain profile. 325 367 IPR010402 GO:0005515
Adu10g02557 394 MobiDBLite consensus disorder prediction 297 318 - -
Adu10g02557 394 CDD Bbox1_BBX-like 23 66 - -
Adu10g02557 394 SMART bboxneu5 67 109 IPR000315 GO:0008270
Adu10g02557 394 SMART bboxneu5 19 66 IPR000315 GO:0008270
Adu10g02557 394 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 19 394 - -
Adu10g02557 394 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Adu10g02557 394 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 394 IPR045281 GO:0009909
Adu10g02557 394 CDD Bbox1_BBX-like 66 109 - -
Adu10g02557 394 Pfam CCT motif 325 367 IPR010402 GO:0005515
Adu10g02557 394 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02557 Adu-Chr10 102133944 102136297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02557 19 394 C2C2-CO-like Transcription Factor Family AT3G02380 49.749 5.95e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Adu10g02557 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02557 - - ahf:112717988 647.506