Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02541 ATGGACTTGGGAGATGAAACCGACATCTCTCAACCCTACACCCAAGAGGACGGCGACCCCCACCTCGTCGGCTTCATCAACGCCAACATCGTCGGCCTCCGCTACTACTCCGGCACCGTCAACGGCCGCGAAATGGTCGCCCTCCTCCGCGAACCCCTCAACCCTCACGACCCCAACGCCATCAAAGTCCTCAACACCCGCTCCATCCAGGTCGGTCACATCGATCGCACCGTAGCCGCCGCGCTTTCCCCTCTCATCGACTCTGAACTCATCACCGTCGAGGCCATTGTCCCCAACCGCCGCTCCAAGACCAACAGCTTCCGCCTCCTCTGCCAAATCCACATCTTCGCCCCTCTCCCTTCGTTCCCCACTGTCATTGAGCTCATCTCCGAGAGAGGCCTACACCTCATAACCCAAAACGACGCCTCCTTTACGTTATCGGAGTCCGTTGCCGTTAAAGAAACCCGCGCTGATTCGAGGTTCAAGACTGTGGACGAGATTTTCAGGCTTGTTGATGAGAGCTTGACGGTCAAGGAGCGTGTGTCTCACGCGCTTGAGCCTCCCGAGAGCATTGTGAGGTCGAAGCTGATGGAGCACCAGAAGGAAGGGGTGTGGTGGCTACTCAACAGAGAGAAAAGCGAGGAGCTTCCACCGTTTTGGGAGGTGGGAGAAGGGGGCGAGTTTGTCAACGTGTTGACCAATTACAGCACGTGCGTTAAGCCAGAGCCTTTGAGGGGAGGGATCCTGGCCGATGCAATGGGGCTCGGGAAGACTCTCACTTTGCTCTCTCTTATTGCCCTTGACAAGGTTTCCGGTCAGAGGAAGGGAAAGAAGAGAAGAAAGATTGAGATTGGGGAGAGCAGTGCAACGCTTGTAGTGTGCCCTCCCTCTGTGTTTTCGACATGGATTTCGCAATTGGAAGAACACACTGTGCCTGGTTCACTCAGGACTTGCATGTATTATGGTGACAAGCGGGCTAAGAATGCTGAGGACCTCATGGATTATGATTTGGTGCTCACTACTTACTCTACACTCTCCGTGGAGGAGGATGACCCCAACTCGCCGGTGAAGAAAGTGGTGTGGAGGAGGATCATATTGGATGAGGCTCACACTATCAAGAATTCAAATGCCCGGCAGAGCAAGATGGTTATTAGTCTCAATGCCAAGAGGAGGTGGGCTGTCACCGGCACACCTATTCAGAATGGTTCCTTGGACTTGTTTTCCCTCATGGCTTTCCTGCATTTTGAGCCCTTCTCCATAAAGAGCTATTGGCGCAGCCTTGTGCAACGGCCTCTTAATCAGGGCCTTCAGAGCGGCCTCTCACGCCTCCAGGTTTTGATGGCGGCAATTTCGTTAAGAAGAACAAAAGATAATGGATTGTTAGGGGTGCCACCAAAAACTATTGAGACTCAATATGTTGAACTTAATTCAGAAGAACGTGAATTGTATGATCGGATGAAAGAGGAAGCGATGCTTTTAATGAGGAGTTTTACCAATGGAACTAACAATTTTCCTGTTGTACTAAGTATGCTTTTGCGTCTTCGCCAAATCTGTACTGATTCAGCATTGTGCCCCAGTGATCTCGCAACGACATTCCGTTCAACTAATCTTGAAGATGTTTCCAATAACCCAGAGTTGTTGCAAAAGTTAGTTGAGATGTTGCAAGAATGTGAAGATTACGAGTGCCCAATTTGCATTTCTCCTTCAGCGGACATCATTATCACCAGCTGTGCTCACATCTTCTGCCGACTCTGTATTCTGAAATCTCTACAATCCAGCAGATCCCGTTGTCCTCTTTGCCGTCAAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCTTCTAAAGCTGATAGTACCTCTTCATCCTCATCATCGGATAAAAAGTTATCTTCCAAAACATCTGCTTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGGTAGTGTTTTCACAATTTCGCAAGTTGTTATTGTTATTGGAGGCGCCTTTGATGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTCGATGACAGTTAAACAGAGGGCTAATGTTATTGATCAATTTCAAGACAATAAAGAAAACGGACCGACCGTTCTGCTTGCAAGCCTTAGGGCTTCAGGTGCAGGTATAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGGTGGAATCCGGCTGTTGAGGAACAGGCAATGGATCGCATCCATCGTATTGGACAGAAAGAGGCGGTGAAGATTGTTAGATTGGTTGTTCTGGACAGCATTGAGGAAAAGATACTGCTGTTGCAGGAGAAGAAGAGGGAATTAGCAAGAGAAACATTTAACAAGAGGGGAAGTGATTCTGGTGGCATGAACTATAAAGATCTAAGTTTCCTTATGTCCATAGAATGA 2427 0.4883 MDLGDETDISQPYTQEDGDPHLVGFINANIVGLRYYSGTVNGREMVALLREPLNPHDPNAIKVLNTRSIQVGHIDRTVAAALSPLIDSELITVEAIVPNRRSKTNSFRLLCQIHIFAPLPSFPTVIELISERGLHLITQNDASFTLSESVAVKETRADSRFKTVDEIFRLVDESLTVKERVSHALEPPESIVRSKLMEHQKEGVWWLLNREKSEELPPFWEVGEGGEFVNVLTNYSTCVKPEPLRGGILADAMGLGKTLTLLSLIALDKVSGQRKGKKRRKIEIGESSATLVVCPPSVFSTWISQLEEHTVPGSLRTCMYYGDKRAKNAEDLMDYDLVLTTYSTLSVEEDDPNSPVKKVVWRRIILDEAHTIKNSNARQSKMVISLNAKRRWAVTGTPIQNGSLDLFSLMAFLHFEPFSIKSYWRSLVQRPLNQGLQSGLSRLQVLMAAISLRRTKDNGLLGVPPKTIETQYVELNSEERELYDRMKEEAMLLMRSFTNGTNNFPVVLSMLLRLRQICTDSALCPSDLATTFRSTNLEDVSNNPELLQKLVEMLQECEDYECPICISPSADIIITSCAHIFCRLCILKSLQSSRSRCPLCRQALSESDLFSAPIEPSKADSTSSSSSSDKKLSSKTSALIKFLKESREQKPTAKSVVFSQFRKLLLLLEAPLMEAGFKTLRIDGSMTVKQRANVIDQFQDNKENGPTVLLASLRASGAGINLTAATTVYFMEPWWNPAVEEQAMDRIHRIGQKEAVKIVRLVVLDSIEEKILLLQEKKRELARETFNKRGSDSGGMNYKDLSFLMSIE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02541 808 SMART helicmild6 666 751 IPR001650 -
Adu10g02541 808 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 416 IPR014001 -
Adu10g02541 808 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 10 268 - -
Adu10g02541 808 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 277 794 - -
Adu10g02541 808 SUPERFAMILY RING/U-box 545 607 - -
Adu10g02541 808 Coils Coil 764 784 - -
Adu10g02541 808 Gene3D - 14 136 - -
Adu10g02541 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 452 IPR027417 -
Adu10g02541 808 SMART ultradead3 192 430 IPR014001 -
Adu10g02541 808 Gene3D - 464 573 IPR027417 -
Adu10g02541 808 SMART ring_2 562 600 IPR001841 -
Adu10g02541 808 ProSiteProfiles Zinc finger RING-type profile. 562 601 IPR001841 -
Adu10g02541 808 Pfam Zinc finger, C3HC4 type (RING finger) 559 605 - -
Adu10g02541 808 Pfam SNF2-related domain 199 521 IPR000330 GO:0005524|GO:0140658
Adu10g02541 808 Gene3D - 610 801 IPR027417 -
Adu10g02541 808 SMART HIRAN_2 23 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu10g02541 808 Pfam HIRAN domain 24 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu10g02541 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 609 IPR013083 -
Adu10g02541 808 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 638 802 IPR001650 -
Adu10g02541 808 Gene3D - 232 455 IPR038718 -
Adu10g02541 808 CDD SF2_C_SNF 638 762 - -
Adu10g02541 808 Pfam Helicase conserved C-terminal domain 635 751 IPR001650 -
Adu10g02541 808 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 10 268 - -
Adu10g02541 808 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 277 794 - -
Adu10g02541 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 806 IPR027417 -
Adu10g02541 808 ProSitePatterns Zinc finger RING-type signature. 577 586 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02541 Adu-Chr10 101907911 101911156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02541 11 807 RAD5 or RAD16-like Gene Family AT5G05130 56.480 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu10g02541 SNF2_N 2.5e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02541 K15711 - fve:101311093 946.421