Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02465 ATGGGAAGAGGGAAGGTGGAGTTGAAGCAGATAGAGAACAAGATCAGGCGTCAAGTAACGTTCTCGAAACGGAAAACGGGGCTGAAGAAGAAAGCGCATGAAATCTCCCTTCTCTGTGATGCTCAACTTGCATTCATTATCTTCAACACCACAGGCAAACTCTCTCACTTTTCATCTCATTCCAGCGTGGAAAACATCCTTGAACGATATGAGAGACATGTTAATGCATTGAAAATCAATGGAGGTGAAAGTGGATCACAGTGTATGAGCAAAGTTGAAGCCTTAGAGAGAAATACAAGGAACTTGGCGGGAAATGATCTTGATTCATTGAGCCTGAGAGAGCTTCAGAATTTAGAGCATCAGCTTGAAGCATCTTTAAAGCGTATCAGAGTAAAAAAGAACAATAATATGAAAGAATCCATCTCGTTGCTGCATAAAAAGGCAAAGGCGTTGCAGGAACGCAAAAGCACGATAACAAAAGAGATTAAAGATAAGGAGAAGACAGTGGTGGTTGAAGGTCCAGAGTGCTGGGTAGAACAAACCCTAATGCAATCTCCCCAAAGACCACTTCCTGCTTTAACACTCGGATAA 591 0.4213 MGRGKVELKQIENKIRRQVTFSKRKTGLKKKAHEISLLCDAQLAFIIFNTTGKLSHFSSHSSVENILERYERHVNALKINGGESGSQCMSKVEALERNTRNLAGNDLDSLSLRELQNLEHQLEASLKRIRVKKNNNMKESISLLHKKAKALQERKSTITKEIKDKEKTVVVEGPECWVEQTLMQSPQRPLPALTLG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02465 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu10g02465 196 Coils Coil 112 168 - -
Adu10g02465 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Adu10g02465 196 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Adu10g02465 196 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Adu10g02465 196 PANTHER MADS BOX PROTEIN 1 196 - -
Adu10g02465 196 Pfam K-box region 90 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g02465 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu10g02465 196 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Adu10g02465 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu10g02465 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu10g02465 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu10g02465 196 ProSiteProfiles K-box domain profile. 78 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g02465 196 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02465 Adu-Chr10 100694802 100706055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02465 1 176 MADS-box Gene Family AT1G26310 50.265 8.85e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu10g02465 K-box 1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02465 K09264 - gmx:100820188 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02979 04 118042519 118054396 Adu10g02465 10 100694802 100706055 PCT