Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02310 ATGTCTAGCAGAAGGTCAAGGCAACAATCAGGGTCTAATAGAATCTCCGATGACCAAATCATCGAACTTGTTTCAAAGTTGCGCCAACTTGTTCCTGAGATTCGAGATAGGCGCTCTGATAAGGTTTCAGCTTCTAAGGTTCTACAAGAGACATGCAACTATATAAGAAACTTACACAGAGAGGTTGATGATTTAAGCGAACGTTTGTCTCAATTGTTGGCCACAATTGATGCTGATAGTGCTGAAGCTGCCATCATAAGGAGCCTAATTAACCAATAA 279 0.4086 MSSRRSRQQSGSNRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDADSAEAAIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02310 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 77 IPR036638 GO:0046983
Adu10g02310 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Adu10g02310 92 Gene3D - 2 87 IPR036638 GO:0046983
Adu10g02310 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Adu10g02310 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Adu10g02310 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Adu10g02310 92 CDD bHLH_AtPRE_like 9 75 - -
Adu10g02310 92 Coils Coil 55 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02310 Adu-Chr10 98122821 98125438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02310 14 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.923 1.87e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu10g02310 HLH 6.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02310 - - gmx:100794486 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g02310 10 98122821 98125438 Adu04g02805 04 115963258 115964315 PCT