Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02203 ATGCTCTACAGGGTTTTAGCACTCACCTCGCCACTCTTCAGCACAAGAGAATCCACCACAGCAAGGAAAGGAACAATGGCTTTCCTCAGTAGAGCTGGAAATATACTAAGGCAAGTGACAAGTAGGAAGATCAGTTCGGATTTATGTGAAATCCCGTCTGTTTTCCCGTCTGCACGGTGCATGTCAAATGCTCCAAGTACAAAGCTGTTTATAGGAGGTGTTTCGTATTCCACTGATGAGCAAAGTTTGAGGGAGGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGGACCGTGATTCTGGCAGATCCAGAGGATTTGGGTTTATTACTTACAGTTCCGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAGATGGGCAGGATCTACATGGTCGCCGAGTTAAGGTAAATTTTGCAAGCGAAAGACCTCGTGGATTTCAAGGTGGTGGTTTCGGTGGCTCTTTTGACAATGCTCCCTATGGTGCTGGAGCTGGTTCTGGATACCAAGGTGGTTATGGTAACTCTCCATATGGTGCAAGTTCAGGTGGTGGTGGCAGCTATGGCGGTGCACATGGTGCCAATGTTGCTGGAGGTTTTGGTAACGGAAGCAGTGGATATGGCGGAGACAGCTATGGATCAAGTGGAAACACTTACAGCAGTGAGAGTAGCCGAGGTTATGGTGGAGGAAACGATATTGGTACTTATGGTAATGCTGCTGCTAGTGGTGGAGGCTATGGTGGCTATGTCCCGGCTTCTGGATTTGACAGGAGCAATAATTACAACACTTCTGCTGGATTTCCTAACAGTGATAACTATGCCAACGCTACTGGTGGTGGTGGAAACAGTTTCCCCAGTAGTCAATACAATGGAAGTGCCATGGCCGGGTATGGCAGTGGTGGTGTGGGTTCTGGCAGCAGTTTTGCCAGTGGATATGGAGCAACGGGACATGGTAGCACTAATGAATGCAATAACGATCAAGGAACTGCTGTGGATGATTTTGGAGGCTCCATGGACTAA 1029 0.4772 MLYRVLALTSPLFSTRESTTARKGTMAFLSRAGNILRQVTSRKISSDLCEIPSVFPSARCMSNAPSTKLFIGGVSYSTDEQSLREVFGKYGDVVDARIIVDRDSGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVKVNFASERPRGFQGGGFGGSFDNAPYGAGAGSGYQGGYGNSPYGASSGGGGSYGGAHGANVAGGFGNGSSGYGGDSYGSSGNTYSSESSRGYGGGNDIGTYGNAAASGGGYGGYVPASGFDRSNNYNTSAGFPNSDNYANATGGGGNSFPSSQYNGSAMAGYGSGGVGSGSSFASGYGATGHGSTNECNNDQGTAVDDFGGSMD 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02203 342 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 26 226 - -
Adu10g02203 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 139 IPR000504 GO:0003723
Adu10g02203 342 PRINTS Eggshell protein signature 189 204 - -
Adu10g02203 342 PRINTS Eggshell protein signature 215 225 - -
Adu10g02203 342 PRINTS Eggshell protein signature 246 264 - -
Adu10g02203 342 PRINTS Eggshell protein signature 63 79 - -
Adu10g02203 342 MobiDBLite consensus disorder prediction 313 334 - -
Adu10g02203 342 Gene3D - 50 160 IPR012677 -
Adu10g02203 342 SUPERFAMILY RNA-binding domain, RBD 61 155 IPR035979 GO:0003676
Adu10g02203 342 SMART rrm1_1 68 141 IPR000504 GO:0003723
Adu10g02203 342 MobiDBLite consensus disorder prediction 313 342 - -
Adu10g02203 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Adu10g02203 342 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02203 Adu-Chr10 95579766 95582317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02203 63 163 Eukaryotic Initiation Factors Gene Family AT3G16380 28.846 8.70e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02203 K12741 - ccaj:109815980 200.675