Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02198 ATGTCCGTGATGTCGTCGGCGTCCTCCCCAGCCATCCGTTCCTGTGTCATCGTCGGCAGCCTTCTCCTCTTGCCCTGTTATTCAATTTGTCCCCAATTCAGAATATGGGGGAATGTTGTAGGGTTTAATGTCCAAACCCATCACTTTCAAGATCCACCTGAAGACGCAGTTGTGACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGTCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAATGAGTACAGTTGGACTAGCATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCTGTATGAAATATAGGAGACTTGATGGGCGGATGTCTCTGATTGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCTGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACGACTGAAGATCAAGCTATTGATCGAGCTCATCGAATTGGATAG 663 0.4329 MSVMSSASSPAIRSCVIVGSLLLLPCYSICPQFRIWGNVVGFNVQTHHFQDPPEDAVVTMCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLSDELGGSNSIKAHDFDHSLVQQNEYSWTSMLDLVEASLQQSCMKYRRLDGRMSLIARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02198 220 CDD SF2_C_SNF 132 220 - -
Adu10g02198 220 Gene3D - 120 220 IPR027417 -
Adu10g02198 220 SMART helicmild6 137 220 IPR001650 -
Adu10g02198 220 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 132 220 - -
Adu10g02198 220 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 50 128 - -
Adu10g02198 220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 220 IPR027417 -
Adu10g02198 220 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Adu10g02198 220 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 114 220 IPR001650 -
Adu10g02198 220 Pfam Zinc finger, C3HC4 type (RING finger) 54 82 - -
Adu10g02198 220 SUPERFAMILY RING/U-box 51 94 - -
Adu10g02198 220 Pfam Helicase conserved C-terminal domain 135 220 IPR001650 -
Adu10g02198 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 98 IPR013083 -
Adu10g02198 220 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 132 220 - -
Adu10g02198 220 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02198 Adu-Chr10 95225875 95227251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02198 51 220 RAD5 or RAD16-like Gene Family AT1G61140 46.957 7.80e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02198 - - rcu:8260732 253.447