LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu10g02198	ATGTCCGTGATGTCGTCGGCGTCCTCCCCAGCCATCCGTTCCTGTGTCATCGTCGGCAGCCTTCTCCTCTTGCCCTGTTATTCAATTTGTCCCCAATTCAGAATATGGGGGAATGTTGTAGGGTTTAATGTCCAAACCCATCACTTTCAAGATCCACCTGAAGACGCAGTTGTGACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGTCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAATGAGTACAGTTGGACTAGCATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCTGTATGAAATATAGGAGACTTGATGGGCGGATGTCTCTGATTGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCTGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACGACTGAAGATCAAGCTATTGATCGAGCTCATCGAATTGGATAG	663	0.4329	MSVMSSASSPAIRSCVIVGSLLLLPCYSICPQFRIWGNVVGFNVQTHHFQDPPEDAVVTMCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLSDELGGSNSIKAHDFDHSLVQQNEYSWTSMLDLVEASLQQSCMKYRRLDGRMSLIARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIG	220

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu10g02198	220	CDD	SF2_C_SNF	132	220	-	-
	Adu10g02198	220	Gene3D	-	120	220	IPR027417	-
	Adu10g02198	220	SMART	helicmild6	137	220	IPR001650	-
	Adu10g02198	220	PANTHER	HELICASE-LIKE TRANSCRIPTION FACTOR CHR28	132	220	-	-
	Adu10g02198	220	PANTHER	HELICASE-LIKE TRANSCRIPTION FACTOR CHR28	50	128	-	-
	Adu10g02198	220	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	131	220	IPR027417	-
	Adu10g02198	220	ProSitePatterns	Zinc finger RING-type signature.	61	70	IPR017907	-
	Adu10g02198	220	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	114	220	IPR001650	-
	Adu10g02198	220	Pfam	Zinc finger, C3HC4 type (RING finger)	54	82	-	-
	Adu10g02198	220	SUPERFAMILY	RING/U-box	51	94	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu10g02198	Adu-Chr10	95225875	95227251	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu10g02198	51	220	RAD5 or RAD16-like Gene Family	AT1G61140	46.957	7.80e-56	189

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu10g02198	-		-	rcu:8260732	253.447

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