Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02180 ATGGGAAGAGGGAAGGTTGTGCTGAAGAGAATAGAGAACAAGGTAAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCATATGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTCTAGTTCCTCCAGCATGATGAAAACCATAGAGAGATATCATATGTACAATTATAGCTTGCCGCAAACCACTCAAGTAAGAAACCATGACACTCAGAACACTTATCAGGACTATGTGACGTTGAAAGCATATGTAGAACTCCTACAAAGTTCACAGAGGAACCTTCTTGGAGAAGATCTAACCAAAATGACTTCAACAGAACTTCAACAGCTTGAAAATCAATTAGAGTCGGCGTTGACGAATATTAGGTCAACTAAGACTCAGTACATGCTTGACCGTCTTACTGATCTTCAGAATCGGTTGGAAGAAATTCAGAATTCACAAGTTCCTCTGAGGCTGGCTTGGGATGGGGAAGGGCCTAACAATAACAACCAATGCACTCATCACTTTTCTCCTCGATCAGATTTTACTTTTCAAACTCTTGGGGTTAATCCCAATTTGCACATCGGGTATAATAATTCCATGGGTGATGATGAGGATGGAAATGTTGAAGCATGCGTCTCTGGTTGGATGCTATGA 690 0.4145 MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSSSSMMKTIERYHMYNYSLPQTTQVRNHDTQNTYQDYVTLKAYVELLQSSQRNLLGEDLTKMTSTELQQLENQLESALTNIRSTKTQYMLDRLTDLQNRLEEIQNSQVPLRLAWDGEGPNNNNQCTHHFSPRSDFTFQTLGVNPNLHIGYNNSMGDDEDGNVEACVSGWML 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02180 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu10g02180 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu10g02180 229 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Adu10g02180 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 - -
Adu10g02180 229 Coils Coil 118 145 - -
Adu10g02180 229 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Adu10g02180 229 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Adu10g02180 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu10g02180 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu10g02180 229 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g02180 229 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 217 - -
Adu10g02180 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu10g02180 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu10g02180 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu10g02180 229 ProSiteProfiles K-box domain profile. 88 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02180 Adu-Chr10 94771799 94780997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02180 1 228 MADS-box Gene Family AT1G24260 51.293 3.67e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu10g02180 K-box 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02180 K09264 - gmx:100804810 264.618