Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02179 ATGGGGCGAGGGAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAGAGGAGAGCTGGTTTGCTTAAGAAGGCTAACGAGATCTCCGTTCTCTGTGATGCCGAGGTTGCTCTCATCATCTTCTCTACCAAAGGGAAGCTCTTTCAGTTCTCTAGCGATTCCTGTATGGAGAGGATAATTGAAAGGTATGAAAGGTATTCATATGCGGAGAGACAGCAGCTTGTGGCAAATGCTCAGGGACCAAATGCAAACTGGACTTTAGAACATGCAAAGCTCAAAGCAAGGGTGGAAGTCTTACAAAGGAATCAAAGGCATTTTATGGGTGAAGATCTTCAAGGCCTAAGTATGAGAGAACTTCAGAATTTAGAACAACAGCTTGATTCTGCTCTCAAACAAATTCGATCACGAAAGAATCAAATCATGTATGAGAATATCTCACTGCTTCAGAAAAAGGAGAAAGCTCTAAATGAACAAAACAATTCACTAGCTAAGAAGATCAAGGGAAAAGAAAAAGCTACCACAGAACAGACTCATCAATTGGAGCTGCAAGATAATTATACTGTTGCACCTCAAACCTCAGAAAACTTGAATATTAGAGGAATGCCACAAGATAGAAGTGATAATGAAGAAGATAATGATAATGAAGAAGGTATCCAAACTAATGCTAGTGCTAATATCCTTCTTCCCAATTGGATGATTCCTCCTACAAATGAATAG 738 0.397 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIIFSTKGKLFQFSSDSCMERIIERYERYSYAERQQLVANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIKGKEKATTEQTHQLELQDNYTVAPQTSENLNIRGMPQDRSDNEEDNDNEEGIQTNASANILLPNWMIPPTNE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02179 245 Coils Coil 89 109 - -
Adu10g02179 245 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Adu10g02179 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu10g02179 245 Coils Coil 123 146 - -
Adu10g02179 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Adu10g02179 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Adu10g02179 245 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g02179 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu10g02179 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Adu10g02179 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g02179 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu10g02179 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu10g02179 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu10g02179 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu10g02179 245 Coils Coil 152 179 - -
Adu10g02179 245 MobiDBLite consensus disorder prediction 197 231 - -
Adu10g02179 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu10g02179 245 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02179 Adu-Chr10 94750387 94758519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02179 1 211 MADS-box Gene Family AT1G26310 58.079 9.39e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu10g02179 K-box 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02179 K09264 - gmx:100816836 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03182 01 103739327 103746640 Adu10g02179 10 94750387 94758519 ECH
Adu04g02978 04 118028637 118034031 Adu10g02179 10 94750387 94758519 ECH
Adu10g02179 10 94750387 94758519 Adu10g02179 10 94750387 94758519 ECH
Adu01g03181 01 103695591 103701396 Adu10g02179 10 94750387 94758519 PCT