Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02178 ATGGGGCGAGGGAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAACCGCCAAGTCACTTTCTCGAAGAGAAGAGCGGGGTTGCTTAAGAAGGCGAACGAGATCTCAGTTCTCTGCGATGCTGAGGTGGCTCTCATCGTCTTCTCTTGCAAAGGGAAGCTCTTTCAGTTCTCCAGTGACCCCTGCATGGAGAAGATACTTGAAAGGTATGAGCGGTATTCATATGCAGAGAGGCAGCTCGTTGCAAATGATCAAGGACCAAATGAAAATTGGACTCTAGAATATGCAAGGCTCAAAGCAAGGGTGGAAGTCTTAGAGAGAAATCAAAGGAATTTTATGGGACAAGATCTGCAATGCTTAAGTCTAAAAGAGCTTCAGAATTTAGAACAGCAGCTTGATTCTGCTCTCAAACAAGTTAGATCACGAAGGAACCAACTCATATATGAGGATATCTCAGTGCTTCAGAAAAAGGAGAAGACCCTACAAGAACAAAACACCTTGCTAGCTAAGAAGATCAAGGAGAAAGAGAAAGCAATCACACAACAAGCTCAACTGGAGCTGCAAAATAACTTTATGGATCTAACCCCCTTTGTTGTGGCACCTCAATCCTCGGAGATGAACATTGGAGAAGAGTTAAAGAAACTTCGCTACAAAGGGAGTTAA 663 0.4344 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSCKGKLFQFSSDPCMEKILERYERYSYAERQLVANDQGPNENWTLEYARLKARVEVLERNQRNFMGQDLQCLSLKELQNLEQQLDSALKQVRSRRNQLIYEDISVLQKKEKTLQEQNTLLAKKIKEKEKAITQQAQLELQNNFMDLTPFVVAPQSSEMNIGEELKKLRYKGS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02178 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Adu10g02178 220 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g02178 220 Coils Coil 88 115 - -
Adu10g02178 220 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Adu10g02178 220 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g02178 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu10g02178 220 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Adu10g02178 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu10g02178 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 210 - -
Adu10g02178 220 Coils Coil 154 188 - -
Adu10g02178 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu10g02178 220 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Adu10g02178 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu10g02178 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu10g02178 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu10g02178 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu10g02178 220 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02178 Adu-Chr10 94725158 94730825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02178 1 209 MADS-box Gene Family AT1G26310 61.435 1.06e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu10g02178 K-box 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02178 K09264 - gmx:100816836 305.064