Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02159 ATGAAAGGAATATCCTATCGGGGTAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATAGAAGCAGGTCGGCGGGCAATGTCACGAAATGTCCGCCGAGGTGGACAAATATGGGTACGGATATTTCCAGACAAACCAGTTACAGTAAGACCAACCGAAACGCGTATGGGTTCGGGAAAGGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCCGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAATATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGGGCGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTCACTGTTACCGATGTACGGGGTCGGGTAATTTCGTGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTACGCGAAGGGGAACACCATTTGCCGCCCAAACCGCAGCAGGAAATGTTATTCGAACAGTAGCGAATCAAGGCATGCAACGAGCAGAAGTCATGATAAAGGGTCCCGGTCTTGGAAGAGATGCGGTATTAAGAGCTATTCGTAGAAGTGGCCAAGCTGATACAATAGGCATTGCGATGCGAAGAGTTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCGACCATAGTAGTTCACAGGAAGCTTGGTTGCAAGAGAAGCATGGTCCCAACTGGATTGGTGACGCGTGGCAAAGCCCCATCTTCTCGCCATCTACGTGATGTCATCACCAGATGCACCTCACTAGCCCCTGTGACGCGTGTCGCTGCCTCTAAGATACCAGCGTTAGTTTCCTGTCGCTTGCAAGAAGTCTTGCCCCGCCACCCACGCGTTCATCATCTGTTACGGtga 1170 0.4607 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNVIRTVANQGMQRAEVMIKGPGLGRDAVLRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVVHRKLGCKRSMVPTGLVTRGKAPSSRHLRDVITRCTSLAPVTRVAASKIPALVSCRLQEVLPRHPRVHHLLR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02159 389 Pfam Ribosomal protein S11 194 280 IPR001971 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 ProSitePatterns Ribosomal protein L14 signature. 133 159 IPR019972 -
Adu10g02159 389 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Adu10g02159 389 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Adu10g02159 389 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Adu10g02159 389 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Adu10g02159 389 Gene3D Ribosomal protein L14 82 192 IPR036853 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 SUPERFAMILY Ribosomal protein L16p/L10e 1 83 IPR036920 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 SUPERFAMILY Translational machinery components 192 279 - -
Adu10g02159 389 TIGRFAM rplP_bact: ribosomal protein uL16 1 83 IPR000114 GO:0003735|GO:0006412|GO:0019843
Adu10g02159 389 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 Gene3D Ribosomal protein L10e/L16 1 81 IPR036920 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 Hamap 50S ribosomal protein L14 [rplN]. 60 196 IPR000218 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 Pfam Ribosomal protein L14p/L23e 80 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 Gene3D Ribosomal protein S11 193 311 IPR036967 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 SMART Ribosomal_L14_2 79 195 IPR000218 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 Hamap 30S ribosomal protein S11 [rpsK]. 127 308 IPR001971 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 TIGRFAM rplN_bact: ribosomal protein uL14 81 193 IPR005745 GO:0003735|GO:0006412|GO:0015934
Adu10g02159 389 SUPERFAMILY Ribosomal protein L14 78 193 IPR036853 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 Pfam Ribosomal protein L16p/L10e 2 83 IPR016180 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 82 193 - -
Adu10g02159 389 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 82 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
Adu10g02159 389 CDD Ribosomal_L16_L10e 7 83 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02159 Adu-Chr10 94253290 94260191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02159 79 191 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.752 6.77e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02159 K02874 - dct:114579343 307.375