Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01925 ATGGATTCATCAAACCAGAACCAACCTTGTCCCAACCGAACCTTTAATCACTTATACACAAAACCTTGTGCTGAGGAATCAGAATCAGGTTCACTCCCTTTCGAGACACCACAGACCATGGACCCTAGAGGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAATACAATAGCAGTATTGGATACAGGTGCTGGTAAGACCTTAATAGCTGTGTTGCTTATGAAGAACATTGGTCAAGCTATCAGGTCCAGTGGCTCCAAAAAGTTGATTATTTTCTTAGCTCCAACCGTCCATCTTGTCAACCAGCAATATAAGAATATAAGAGATCTTACAGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGACGCATGGGATTTAAGTATCTGGGAGAAGGAAATTAGTGAAAATGAGGTACTGGTTATGACACCCCAGCTTCTTTTGGATGCTCTAAGAAAGGCTTTCTTGAAGATGGAATCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAGGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCAGTAGGTAAAAAAGGTGTTTCCTCTTCTGTGGATTGTGAGGGTCAGATATCAGAACTGGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAGGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGATTTGAATTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCGGAATTACAAAGCTCAACTGACGGTACCTCTAAGGATGTGGAGAATAAATTAAATACGCTGCATAAGCGGATGTCCAATGAACTTGCAAGAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAATTTCTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCAAAAAGGTTTTAGTCAGTGCAAAGCATTCATTGACGTAGTCATGCAAATAGTTGAAGAATCCCTCCATCTTGATGATAACAAGATTCCAGAGCTTGATTTTGATTTTTCAAAGGCAGTAGACCTGGGATACTTATCTCCCAAATTACTTGAACTTATTAAACTCTTCCAGTCATTTGGACATTCATGTGAGGTATTGTGCCTTGTTTTTGTCGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTTACAGTTTCCTATTTAACCGGAAACAATACGTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAACATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACAACTGAGGTAATTGAGGAAGGAATTCATGTGCCAAAGTGCTCATGTGTGATACGTTTTGACCTACCGAACACATGTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATGACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACGTGGATCAAAGAAATAAACTGTTTCACATCATCAGGAGTGAGCGATCCGTGACTGAAGCGGCTATATATAAGGAACATCATGCTTCTAATTTAAGGGTGATTACGGAAGTGAAATCAAATATATATTATGTTGAGTCTACTGGAGCATCAGTCAACTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACCCCCGTGCAAAGCCCAATTTTGAATTCCTGCCTTTTGAAGGGGCATACAGGTGTAAATTAACATTACCACCTAATGCAGCTTTCCAAACAATAGTCGGTCCCTTGGGTAAAGATGTCCGTTTGGCAAGGAATCTCGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAGATGCATGCCTTAAATGATCATCTTGTCCCATTCACTGAAAAGCCTCCAAAAGCTGAACATAGCGTGCAAAACAAAGAATCTGGTACAGGATCAGGCGCAGGAACCACAAGAAGAAAAGAATTACATGGCACAGCCAGCATTCGAGCTTTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCAGTGAAATCTTCTCAGGATTTGTTCTCCTGATTGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATCAAAAAAACCGTAAAGGCTTCCTTATCTTTCTGTGGACAAGTTTATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATAAGTCCAAATCAGTAAAAGGAGAGAGGGAATTCTTGCTTCAGAAAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCACTACAAAAAGGGGATGATGAATCTAAAGGATCTTTGGAAATAAATTGGTCTGGAATAAGTTCTTGTGCTCCTGCAGTTGAATTTTTAAGGAACAAGTTTTCAGTGGTTGCTGGAGATTATGATGGGGGCAGTAAAATTGCGTCACCTTGTGATGCTAATTCATCAAAGGTGGCCTGTGAAGGCACAGATAAAATTCACTTTGCCAATTGTGTAGTTGATGCTAACAGTATAAAGAATCGGGTAGTTTTGGCTATTCACACTGGAAGAATATATTGTATTCTTGAAGCAGATAACAAGCTATGCGCTGAAAGTCCGTTTGATGGAAACGATGAGAACTATGGGATTGCTATGAAACATCCAGGACAACCTTTATTACGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGGATAAGTCATCGCAAATTGGCTCAGCAAACACCAAAATGCCTGCGCATGTTCACATTCCACCTGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCTCTCACGTTGTCCAGTCAGCTTAGACGAGAGATAGATGGTCAGAGTAGCAATTTCAGCATATCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTGGGAGATTCTGTTCTTAAGTTTGTAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGGAACATGAAGGGAAATTATCTGATAGACGGAAGTGGGCTGTTTGTAATTCAACTCTGCATAAACTGGGAATAAATCGCAAATTACAGGGCTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACATGTTGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCAGACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTCTGTGACCAGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTTATAGGAGCATACTATGTAGTTGGCGGATTGATTGCTGCACTACGTGTCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACTGTCCTTGGTTGAGGAAGCCATTGCTGCTGCATCTCTCCATACATATGCACCAAAACAAGACGAGATTGCAACCCTTGAAATGAAAATTGGGTATAAATTTTCTGTTAAGGGACTCTTACTGGAGGCAATGACACATTTATCTGAGGCTGAACTTGGGATTGGTTGCTGCTATGAGAGGCTTGAATTTCTCGGCGATTCTGTATTGGATCTTCTTATTACATGGCATCTTTATCAGAGCCATAAAGATATTGATCCAGGAGAGCTTACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACACCTTCTGCTCAGCTCTGGAGATTTGGTGAGCCAGATATCAGAATATGTTAAGGTCATTTCTGAATCAGAGAGCAGTACCAGATCACTCCCAGGCGTTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGAAGTGTGGAGAATTTTCAATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAATTGCCTCCGTTGCGTGAACTAACTGAATTATGTGACTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACTGTGCATGCTGAACTTAGTGTACAACTGGAAAACGCACTTTTAGTTCGGAAGGGAAACGGAATGAATAAAAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGAAAGATCTCAAGAAGAAGGGAATTTCTCATGGCAGTAGCATGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTATGCGATTCGTCTAATCCAGAAACCAATATTGGTATTTGCACTGCTCTAACAGATGGACATTCGTCAAAGGCAGTATCGAATAAGAGGGCGAAAGTGGATGAAACTAACACAGCAGAAATTGCATCTGCTGTTTCTTTGCCCCACAAAGACTCATCTCCTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATTAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCAGAATTTGATTCAATAGAGTATAAAGATAGATCCCTGTTTGAATCCAGCGAAGGCCTGGAAGGAACAAAGGGATTCAACTGCTTTGTGTCAAAAATAACCTTGTGCATACCGAATGATGGTAATATAGAATGCAAGGGAGAAGCTAGAGCTGATAAGAAGAGTTCATATGACTCTGCTGCAGTTGAAATACTTCATGAGCTACAAAGACTGGGGAAGCTTAAGATTGGTGATGCTTAG 4995 0.4006 MDSSNQNQPCPNRTFNHLYTKPCAEESESGSLPFETPQTMDPRGYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIRDLTDFQVQEYYGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGTSKDVENKLNTLHKRMSNELARVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYQKGFSQCKAFIDVVMQIVEESLHLDDNKIPELDFDFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVIEEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNVDQRNKLFHIIRSERSVTEAAIYKEHHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPRAKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEKPPKAEHSVQNKESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAYRFDFKCSIVSEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMMYAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGSLEINWSGISSCAPAVEFLRNKFSVVAGDYDGGSKIASPCDANSSKVACEGTDKIHFANCVVDANSIKNRVVLAIHTGRIYCILEADNKLCAESPFDGNDENYGIAMKHPGQPLLRLKQSHNAHNVLLNFYEEDEKDKSSQIGSANTKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNFSISSSLILEALTTLRCCENFSMERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKTISDCVEALIGAYYVVGGLIAALRVMKWLGIDSELELSLVEEAIAAASLHTYAPKQDEIATLEMKIGYKFSVKGLLLEAMTHLSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPGVKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELTELCDSLGYFIKENCKRKGTTVHAELSVQLENALLVRKGNGMNKKIAKGEAAFHLLKDLKKKGISHGSSMPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKAVSNKRAKVDETNTAEIASAVSLPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEFDSIEYKDRSLFESSEGLEGTKGFNCFVSKITLCIPNDGNIECKGEARADKKSSYDSAAVEILHELQRLGKLKIGDA 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01925 1664 MobiDBLite consensus disorder prediction 669 691 - -
Adu10g01925 1664 CDD RIBOc 1257 1407 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 530 IPR027417 -
Adu10g01925 1664 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 26 1658 - -
Adu10g01925 1664 Gene3D paz domain 889 1001 - -
Adu10g01925 1664 SMART helicmild6 424 514 IPR001650 -
Adu10g01925 1664 Pfam Helicase conserved C-terminal domain 413 511 IPR001650 -
Adu10g01925 1664 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1443 1478 IPR014720 -
Adu10g01925 1664 SMART riboneu5 1047 1220 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 SMART riboneu5 1256 1409 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 Pfam Ribonuclease III domain 1277 1385 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 Pfam Ribonuclease III domain 1065 1199 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 Gene3D - 1576 1655 - -
Adu10g01925 1664 Pfam Type III restriction enzyme, res subunit 53 206 IPR006935 GO:0003677|GO:0005524|GO:0016787
Adu10g01925 1664 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Adu10g01925 1664 ProSitePatterns Ribonuclease III family signature. 1277 1285 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Adu10g01925 1664 Gene3D Ribonuclease III domain 1237 1408 IPR036389 GO:0004525|GO:0006396
Adu10g01925 1664 Gene3D Ribonuclease III domain 1034 1212 IPR036389 GO:0004525|GO:0006396
Adu10g01925 1664 CDD SF2_C_dicer 390 522 - -
Adu10g01925 1664 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 552 IPR001650 -
Adu10g01925 1664 PANTHER DICER-RELATED 26 1658 - -
Adu10g01925 1664 Pfam Dicer dimerisation domain 582 668 - -
Adu10g01925 1664 Gene3D - 388 547 IPR027417 -
Adu10g01925 1664 ProSiteProfiles Ribonuclease III family domain profile. 1028 1200 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 206 IPR014001 -
Adu10g01925 1664 ProSiteProfiles Ribonuclease III family domain profile. 1241 1386 IPR000999 GO:0004525|GO:0006396
Adu10g01925 1664 SMART ultradead3 38 237 IPR014001 -
Adu10g01925 1664 SUPERFAMILY RNase III domain-like 1042 1217 IPR036389 GO:0004525|GO:0006396
Adu10g01925 1664 CDD DEXHc_dicer 42 238 - -
Adu10g01925 1664 Gene3D - 36 274 IPR027417 -
Adu10g01925 1664 SUPERFAMILY PAZ domain 903 1003 IPR036085 GO:0005515
Adu10g01925 1664 SUPERFAMILY RNase III domain-like 1240 1406 IPR036389 GO:0004525|GO:0006396
Adu10g01925 1664 CDD RIBOc 1048 1211 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01925 Adu-Chr10 87388082 87398688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01925 438 511 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 4.08e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01925 K11592 - gmx:100806831 2317.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g01925 10 87388082 87398688 Adu10g01925 10 87388082 87398688 ECH
Adu01g01964 01 86469175 86477966 Adu10g01925 10 87388082 87398688 ECH
Adu03g02323 03 53852062 53864971 Adu10g01925 10 87388082 87398688 ECH