Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01883 ATGGAGCTGATTGAGAAGGAAAAAGCTCGGAAGGCAACATTCCTAAAGAGAAAGAATGGATTAATAAAGAAAGTGTACGAATTCTCCACACTTTGTGGTGTTGATGTTTGTGTAATCATCTATGGCCCCAGCTTTGATGGAGGAAAATCCAGCGAACCTGAAACATGGCCCCAAGATCCTAAGGAGGTACAGCGAATCATTCAAAAGTACCATAACACAACGATTGATAGACGTCCTAGGATCTATGATGTTCAAGAGTATTATAGAGATAGGGTTAAGAAGATTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGCTTAAGATCATGTATCCTACTTGGGATGACTCTTTCAATGATCTTAGGGAGGACCAATTGAGAATGTTTCTTAGCATTTTGGATTCTAAGATTCTTGCTTGCAATCAAAGAATCAACATGCTAAAGCAAGATCCTAAGGGAAAAACAATGGTACAATCAAAACCCAATTTTGAGGATGTTGTTGCTTCATCAAACCCTTTCATGCCAAACATGCCTCAAGCACAGTTTCTTCCTCATCTTCCCATGACACCCATTATTGATGATACCGCCCAATTACCATTCTACCCTTTGCAAGTAGGGCAAAGTTCATCACAATCTTCCCCTCTTCTTTTTGACCAAAATTGTGGGACTGTGGATTGGGGTGCTTGTAGCACTCATGACAATGGAGATGGAAGCAATCATTACAAAGGGAATATACAATCAATTGAGCCATATAGTTTTGCTCTATCACAATATCAAGATATGCCTCACGAGTTTCAAGCTCTTAATGCACTACATAATGCAAATATGTTTCATCATCAAGTTCAAATGTTCAACTACATGCATGAAAGGAAACTCCCAATTCCACACGGCCATACCCACAGACCAACACCCACGCACTTCAGCTCCACTTTCATCATTCATCACTGTCACGATCCGTCGCACCATCACGTCAGAGAGAGTGAGAGACAGAGAACACCTGAAGCCCTGAACGCCATCACGATCCGTCGCGCCTTCAGCACCGTCGTGCCGTCAGCTCCGTGGTGCCATTGGGTCCGTCACGCCGTCAGCTCCGTCGCGCAGTCAGCAGCGTCGCGCCGTCAGCTCTGTCGTGCACTCAGCCACTTCGACCAGTCACCTCCGTCAAGCTCTGAGAGAAAGCAATAA 1185 0.443 MELIEKEKARKATFLKRKNGLIKKVYEFSTLCGVDVCVIIYGPSFDGGKSSEPETWPQDPKEVQRIIQKYHNTTIDRRPRIYDVQEYYRDRVKKIEGEISKVHKEKLKIMYPTWDDSFNDLREDQLRMFLSILDSKILACNQRINMLKQDPKGKTMVQSKPNFEDVVASSNPFMPNMPQAQFLPHLPMTPIIDDTAQLPFYPLQVGQSSSQSSPLLFDQNCGTVDWGACSTHDNGDGSNHYKGNIQSIEPYSFALSQYQDMPHEFQALNALHNANMFHHQVQMFNYMHERKLPIPHGHTHRPTPTHFSSTFIIHHCHDPSHHHVRESERQRTPEALNAITIRRAFSTVVPSAPWCHWVRHAVSSVAQSAASRRQLCRALSHFDQSPPSSSERKQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01883 394 Gene3D - 6 93 IPR036879 GO:0003677|GO:0046983
Adu10g01883 394 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 44 IPR002100 GO:0003677|GO:0046983
Adu10g01883 394 SUPERFAMILY SRF-like 1 91 IPR036879 GO:0003677|GO:0046983
Adu10g01883 394 ProSiteProfiles MADS-box domain profile. 1 44 IPR002100 GO:0003677|GO:0046983
Adu10g01883 394 PANTHER MADS BOX PROTEIN 1 189 - -
Adu10g01883 394 CDD MADS_SRF_like 1 71 IPR033897 GO:0000981|GO:0000987|GO:0045944
Adu10g01883 394 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 1 189 - -
Adu10g01883 394 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01883 Adu-Chr10 86134388 86141278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01883 1 274 Type I MADS-box Gene Family AT5G55690 29.831 3.84e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu10g01883 SRF-TF 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01883 - - adu:107470541 607.06