Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01828 ATGAGGAGCAAAGAGGTATCCCCGCCCTATCTGTTGATATCCCTACCTCCTCCCCCAAAGAAAATAAAGAGAAAAAAAGAAAAAGGAGAGGGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCTATTTTGAAAACAAGGATATGGCTTGGAACGTTTGAGACAGCAGAAGATGCAGCAAGAGCGTACGATGAAGCAGCAAGGTTGATGTGTGGAACAAGAGCCAGAACCAACTTCCCTTACAACCCTGATTCCTCTCACTCCACGCCATCTAAGCTTCTCTCTGCTACTTTAACCGCTAAGCTTCACAGGTGTTACATGGCCTCTCTTCAAATCACTAGACCTTCTCCCAACAACAATGGCGCCTTTTCCACTGCACCAACACCCACCATCCAACAGAAGAGACCACACAAGGATGAACAACAGCAACAGCAACAGCAACAAGAACAACAATGTTCATCTTCATTGGAAGATGGCAACTGGGTTTCCATGAAGAAGGTTAAAGTGGAAAATCATGAGTTTATTAAGCCTCTTGAAGAAGATCACAATCACATTGAGCAAATGATTCAGGAGTTGCTTCATTATGGCTCCATTGAGCTCTGTTCTCTTTAA 615 0.4455 MRSKEVSPPYLLISLPPPPKKIKRKKEKGEGHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPDSSHSTPSKLLSATLTAKLHRCYMASLQITRPSPNNNGAFSTAPTPTIQQKRPHKDEQQQQQQQQEQQCSSSLEDGNWVSMKKVKVENHEFIKPLEEDHNHIEQMIQELLHYGSIELCSL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01828 204 MobiDBLite consensus disorder prediction 113 133 - -
Adu10g01828 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 202 - -
Adu10g01828 204 SUPERFAMILY DNA-binding domain 32 83 IPR016177 GO:0003677
Adu10g01828 204 MobiDBLite consensus disorder prediction 113 158 - -
Adu10g01828 204 Gene3D AP2/ERF domain 27 82 IPR036955 GO:0003700|GO:0006355
Adu10g01828 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 30 202 - -
Adu10g01828 204 Pfam AP2 domain 32 73 IPR001471 GO:0003700|GO:0006355
Adu10g01828 204 MobiDBLite consensus disorder prediction 144 158 - -
Adu10g01828 204 ProSiteProfiles AP2/ERF domain profile. 18 81 IPR001471 GO:0003700|GO:0006355
Adu10g01828 204 SMART rav1_2 32 87 IPR001471 GO:0003700|GO:0006355
Adu10g01828 204 MobiDBLite consensus disorder prediction 1 29 - -
Adu10g01828 204 CDD AP2 32 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01828 Adu-Chr10 83826272 83829356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01828 32 204 AP2-EREBP Transcription Factor Family AT5G25190 57.062 8.04e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu10g01828 AP2 1.9e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01828 - - adu:107470449 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g01828 10 83826272 83829356 Adu10g01828 10 83826272 83829356 ECH
Adu06g02877 06 106285525 106286439 Adu10g01828 10 83826272 83829356 PCT