Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01821 GGCGGAGGTGGGTTGGTGAACTGGCAGAATGCTCGGTACAAGGCGGAGATTCTGTCACACCCGCTTTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTGGACCAGTTACCAAGGATCGACGCTCAGTTGGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTTCCTTCGCTCACGCTCCTCTCGGCGATGACAAAGAGCTCGACCAGTTCTTGTCACACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGAGATTGAGCAATCCTTACAAAGTCTAACAGGAGTTTCGCCAGGGGAAGGTACCGGAGCAACAATGTCCGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTTCCGATAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTTATGGAACGTGTAAGACATGAATTGAAGCATGAACTGAAACAGGGTTATAAGGATAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAAAGACGAGCCGGGAAACTTCCCGGGGACACCACCTCTGTTCTTAAAGCATGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACAGGATTGCAATTGAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGTAATCCTTCAACTTCTACTTCCTTGAAGAGCAAGCGCAAAAGGTGA 822 0.4891 GGGGLVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSSFAHAPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGSDSMGFGPLVPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTSLKSKRKR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01821 273 Coils Coil 267 273 - -
Adu10g01821 273 ProSiteProfiles 'Homeobox' domain profile. 196 259 IPR001356 GO:0003677
Adu10g01821 273 SMART HOX_1 198 263 IPR001356 GO:0003677
Adu10g01821 273 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 273 - -
Adu10g01821 273 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 5 273 - -
Adu10g01821 273 Pfam ELK domain 176 197 IPR005539 GO:0003677
Adu10g01821 273 MobiDBLite consensus disorder prediction 253 273 - -
Adu10g01821 273 SMART ELK_2 176 197 IPR005539 GO:0003677
Adu10g01821 273 CDD homeodomain 199 260 IPR001356 GO:0003677
Adu10g01821 273 Pfam KNOX1 domain 13 54 IPR005540 GO:0003677|GO:0005634
Adu10g01821 273 Pfam KNOX2 domain 68 118 IPR005541 GO:0003677|GO:0005634
Adu10g01821 273 SUPERFAMILY Homeodomain-like 198 262 IPR009057 -
Adu10g01821 273 Gene3D - 197 258 - -
Adu10g01821 273 SMART KNOX1_2 11 55 IPR005540 GO:0003677|GO:0005634
Adu10g01821 273 ProSiteProfiles ELK domain profile. 176 196 IPR005539 GO:0003677
Adu10g01821 273 SMART KNOX2_2 64 119 IPR005541 GO:0003677|GO:0005634
Adu10g01821 273 Pfam Homeobox KN domain 216 255 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01821 Adu-Chr10 83340401 83342794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01821 1 273 Homeobox Transcription Factor Family AT5G25220 87.189 0.0 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Adu10g01821 KNOX2 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01821 - - gmx:100810257 498.049