Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01711 ATGACTGTTGATGATGTTGATAAGGATACTACCAAGAAGCAAAAGATGTATTGGGAAGAAACTTTAGAGACTACAGATGCTGAAGCCTCAGTTTCAGATTCACCTAATGTGAATGTTGATGTGGTGAACTCTGTGAACCCTACTGAAGAACATATGGCAACAAATAATGCATGGTGCAAATCGAGGAACCACTTCAAGGTTTATTCAATTCATGACAACTCCACCATCCACAATTCAAACAGCAGGCAGATAGCCAGTACCTGGGTTTTACCAACAATAGAATCTTCAAGTGGGAACAACAATGGGAGGCACTCGAGAGGAACCAACCAAAGCATACCCGTCGACGTTTTTATTCATCCCCATCTGAAGCAACAGAAAACCCCCAAAACCCTAGAATTTCAGGATTCCTCTGCAATCTCTGACACAAAGCGCGAGAGATTGAGAGCAGCAACAGCAATGGAGTTCGACGAGTATGACTACTTGGAGAAGACGGTGGAGGACCATGACGACAGAGATTCGTCTAAGAAGACCAAAAAAGACAGCTCCGAGAAAACCTACCGGAAGCGCGACGAGCTCGACGACGATCTAGACGCTGCCGCCTACGACGGGCGCATCAAGAAATCCAGGGCCGAGGAAGAGAACGGCTCCAGGAAGGATCGGGATGGCCGCGATAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAGAAGAAGGAGAAGGAGAAGGAAAGGGAGAGAGAGAGAAAGGAGAGGGAGAGGGACAGAGAACGAGAGGAGGGGTCCAGGAGGAGCAGTTGAGTTTGGGACATAACTTCCTCTCAAGAATAGGTGCTGTCTTGGACTCTAATGTTAGCGATTCACGTTTGAATTATTGCTACAAATTATACAGTCTAAATATCAGGAGACAGAGGGAAAAGAAAGAAGCTGCAGAGCCTGAGGCAGATCCCGAAAGGGATCAGCGAACTGTTTTTGCCTACCAGATGCCTTTGAAGGCAACAGAGAGGGATGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCACTTGATCTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATTCCAAGGCAGCTCTGAGTTTAAATGGAAAACTGGAAATTGCTGGCAGGACTATCAAGGTCTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCGAAATCTGCAGACTTCGATGATGATGAAGGTGGATTGGCTTTAAACGCTCAATCAAGAGCTTTACTTATGCAGAAGCTGGATCGCTCTGGCATTGCTGCTAGCATTGGCGTTCCACCAGTTGTGAATGGGTCGGCCCCTGCACAGCAAGCTGTTAGCTTGCCTATTGGTAATCCAGGCATAATACCAGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCCGAGCCTGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACTGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTATGGGCGGGTGAAGCATATCTCTGTTGACAAAAACAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCCGCTCAACGTGCATTGCACCTGAGGTGGTTTGCACGTAGATTGATTTCAGCTTTGTTCATGCAACCTCAGATGTATGAAGAGAAGTTTAAAGGGGAGGTTTGA 2109 0.4424 MTVDDVDKDTTKKQKMYWEETLETTDAEASVSDSPNVNVDVVNSVNPTEEHMATNNAWCKSRNHFKVYSIHDNSTIHNSNSRQIASTWVLPTIESSSGNNNGRHSRGTNQSIPVDVFIHPHLKQQKTPKTLEFQDSSAISDTKRERLRAATAMEFDEYDYLEKTVEDHDDRDSSKKTKKDSSEKTYRKRDELDDDLDAAAYDGRIKKSRAEEENGSRKDRDGRDRXXXXXXXXXXXXXXXXXXXXXXXXEEEGEGEGKGEREKGEGEGQRTRGGVQEEQLSLGHNFLSRIGAVLDSNVSDSRLNYCYKLYSLNIRRQREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAALSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGVPPVVNGSAPAQQAVSLPIGNPGIIPAPTLPTQLMTNPVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHISVDKNSAGFVYLQFETVEAASAAQRALHLRWFARRLISALFMQPQMYEEKFKGEV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01711 702 MobiDBLite consensus disorder prediction 203 277 - -
Adu10g01711 702 CDD RRM2_RBM23_RBM39 439 511 - -
Adu10g01711 702 CDD RRM3_RBM39_like 607 689 - -
Adu10g01711 702 SUPERFAMILY RNA-binding domain, RBD 603 690 IPR035979 GO:0003676
Adu10g01711 702 Gene3D - 247 422 IPR012677 -
Adu10g01711 702 TIGRFAM SF-CC1: splicing factor, CC1-like family 315 698 IPR006509 GO:0003723|GO:0005634|GO:0006397
Adu10g01711 702 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 530 626 IPR029123 -
Adu10g01711 702 SMART rrm1_1 336 408 IPR000504 GO:0003723
Adu10g01711 702 SMART rrm1_1 438 511 IPR000504 GO:0003723
Adu10g01711 702 SMART rrm1_1 609 686 IPR000504 GO:0003723
Adu10g01711 702 Coils Coil 250 254 - -
Adu10g01711 702 Gene3D - 433 529 IPR012677 -
Adu10g01711 702 PANTHER CC1-LIKE SPLICING FACTOR 153 702 - -
Adu10g01711 702 MobiDBLite consensus disorder prediction 251 272 - -
Adu10g01711 702 CDD RRM1_RBM39_like 336 408 - -
Adu10g01711 702 SUPERFAMILY RNA-binding domain, RBD 436 514 IPR035979 GO:0003676
Adu10g01711 702 MobiDBLite consensus disorder prediction 203 226 - -
Adu10g01711 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 437 515 IPR000504 GO:0003723
Adu10g01711 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 412 IPR000504 GO:0003723
Adu10g01711 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 631 683 IPR000504 GO:0003723
Adu10g01711 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 404 IPR000504 GO:0003723
Adu10g01711 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 439 509 IPR000504 GO:0003723
Adu10g01711 702 Coils Coil 223 225 - -
Adu10g01711 702 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 153 702 - -
Adu10g01711 702 Gene3D - 603 701 IPR012677 -
Adu10g01711 702 SUPERFAMILY RNA-binding domain, RBD 328 416 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01711 Adu-Chr10 78784084 78792680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01711 366 618 Eukaryotic Initiation Factors Gene Family AT1G49760 26.217 1.07e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01711 K13091 - gmx:100802446 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03105 03 115557181 115562649 Adu10g01711 10 78784084 78792680 ECH
Adu10g01711 10 78784084 78792680 Adu10g01711 10 78784084 78792680 ECH
Adu03g03105 03 115557181 115562649 Adu10g01711 10 78784084 78792680 PCT