LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu10g01424	ATGCAAGGTCAAAGAAGGACAACTGGATCATTCCCTGCTATTGTTGGTATGATGCAAGGGCCTAACTCGAGCGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAAAGTACCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCTTGTTTACGAGCTACTGGTCCTAACATACAGAGTTTTAGTGGCTGGAATACTGGTGAACCGAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCTGAACATGGTCCATCTTCATCATGTAGTGCTACTGCCGAGGATGGTCTCAGAACAGAGGAAAGGTCATTTGAATCAAATAATATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAATCATTCTAGAATTCAGCCTTCTTTTTTGCGAGGATCCAGCTCCAGTCATATAACCCAGAATGGTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCAAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAACAGCATTCAGCAGTGCTTCATACAATCGTCATACTGGAACTTCATCCAAAAACCCTGGATTCATGACTTGGGGAAATAGTGGCAGTTCAAGTTCCGCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACTGGAGGAAGCTCAAACACTCTTTTACAATCCGAAAATGGATGTTGGCCCACTAATCCTGTTGATCTTAATGTTTCAAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCATTACAGCTGAACTTGAGAAGTGAAGTGAGCCAAGGAGCAACTGATGCATTTCCCTTAATAAATGTCCCAGAAAATGTGGAAAGGCCTCTCAGAAACTTTGATAGGAGAATGGCCCATGTACAGCATCAGGAATCTATACCTCTCAATTTACCATCAACAGTGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCTGGCTCCCACTCATTTAATGATTCTTTGGAATTGAGGTTAACGCCTGGAGTAAATGCTGCTAATTCTGGTGCTCCTCAGAACCAGTCACCTCCCCTTAACATGCCTCCTTTTCCTTGGAATAGAGCTTCTAACCCTAGAGGGGCTAGATCTTCAACTTCTCATAACTCTGTAGAAAGAGTCGTACAGGAAGATTTTAATATAAGAATTTTTCCAAGAGAGAGTTCTGGGCACCCGACGAATGTACCTGCACCCACAGTACATGAACCAACACCATGGCGTACATCCTCTGCTAATGTAAACAATTCTGGAGGTGTACCTACTACATCTTGGATGGGATCTAGTTCAAACATCGTTCCATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCTACAGATAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCTGCTCCATCCTCTTCAGGATCTTCTTCTATTACTCAGGGGTCCCGCAACAATCAACCATATCTAAGAGCAGCATTGTTGATGGAAAGGAGGGGTGGCGATGTACTCTCTACTCCGCGAGCATTAACCGTTGACAATGAGGGAAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGATAACTTAAGGGCTGAGGATTATATGCTTTTTGACCCTTTCATATATCATGGGATGGCTGAACTGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGATGTCAGCACTGGATTGAGCGAGGATGTCATTTTGAAGTCGATGAAACAGCAAATATACATGTCTGTTATGGCGGAGTCTTCTACAGATCTTGAGCCTTGTTGTATCTGTCAGGAGGATTATACTGAAGGAGAGAATGTTGGCTCGCTAGATTGTGGACATGAATTTCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA	2142	0.4318	MQGQRRTTGSFPAIVGMMQGPNSSGTDMNHQSSLNHVQSTVDFRLSDYRGSTGETACLRATGPNIQSFSGWNTGEPSSRLNLINQVNDEGLKSEHGPSSSCSATAEDGLRTEERSFESNNMIFPVSSNTNLHGNHSRIQPSFLRGSSSSHITQNGNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQTAFSSASYNRHTGTSSKNPGFMTWGNSGSSSSALVNWGSSCKRKALEGSSGQLCTGGSSNTLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVSQGATDAFPLINVPENVERPLRNFDRRMAHVQHQESIPLNLPSTVSSRHHNHSSPHQIPGSHSFNDSLELRLTPGVNAANSGAPQNQSPPLNMPPFPWNRASNPRGARSSTSHNSVERVVQEDFNIRIFPRESSGHPTNVPAPTVHEPTPWRTSSANVNNSGGVPTTSWMGSSSNIVPLPNPSWIVNPEVPTDNLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFIYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVILKSMKQQIYMSVMAESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT	713

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu10g01424	713	SMART	ring_2	666	706	IPR001841	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	89	106	-	-
	Adu10g01424	713	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	3	713	IPR045191	GO:0061630
	Adu10g01424	713	PANTHER	ZINC FINGER PROTEIN, PUTATIVE-RELATED	3	713	-	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	17	34	-	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	166	189	-	-
	Adu10g01424	713	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	631	710	IPR013083	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	169	189	-	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	340	359	-	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	89	112	-	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	512	533	-	-
	Adu10g01424	713	CDD	RING-H2_TTC3	665	707	-	-
	Adu10g01424	713	SUPERFAMILY	RING/U-box	645	709	-	-
	Adu10g01424	713	ProSiteProfiles	Zinc finger RING-type profile.	666	707	IPR001841	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	127	154	-	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	427	453	-	-
	Adu10g01424	713	Pfam	Ring finger domain	666	707	IPR001841	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	372	413	-	-
	Adu10g01424	713	MobiDBLite	consensus disorder prediction	1	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu10g01424	Adu-Chr10	54157711	54163226	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu10g01424	18	713	C3H Transcription Factor Family	AT2G15530	36.474	3.32e-107	340

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu10g01424	-		K19041	gmx:100809024	1085.09