Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01423 ATGGCCATGAGTGTTGAGAATCAAGACCCTAATGACATAGGATTCTTTTGGGATAACCAACCATGGGATGTCTCAAATTTTGATAACTTAGGTCAAAGAGAAACGAAAGAGAACCTACATATAGAAATGCCTCCTCTGCCACCAGCTCCTATCAACCACCTCACACAGGGAGAAATAGAGAAGAAAAATGAAGAATTCACGACGCCGGTTACAAACAACAAGAAGCGACGCCGAGCTGACGAAGATGGCAAGAGGCCTATGAAGAATGATGGTAATGATCATGATCTCCATATATGGACAGAGAGAGAACGAAGGAAGAAAATGAGGGACATGTTTGCTAATCTTCATGCTATGCTTCCTCAACTTCCTCCTAAGGCAGACAAGTCATCCATTGTGGATGAAGCAGTGAGGCACATCAAAACTCTGCAACAAACGGTTGAGAATCTCGAGAAAAAAAAGCGACAGAGGATTCAATCTCTCTCTGTCTCTGTGTCACCAATTGTGTGCGAATCTGCTGTGACCGACCCTCAGTGGAACCCTTACGACTCATCATCCTTGTCAAGAGATAATAATGCATTAACTATAACCGGCACTCAACATGCTTCGAATCCATCTTTTGTTTCTGCTGCTGTTGCAAATAATTCACCGTTTTTTAAGACTTGGGCTTCACAGAATGTGGTACTGAACATGTGTGGAGAGGAAGCACAGTTCAGCATATGTGCAGAGAAGAAGCCTAGTCTCTTCACCACCATTGCTTTTGTGCTCCAGAAGCATAAGGTTGACGTCATTTCTGCTAGTATCTTGTGCAACCATAATGTCAATAGATACATGGTCCTTACTCATGCAAGTAGGGCTTTACTTCAATTTGCAGACGCAAATACAGTGGAGGAAACTTTCAAGCGTGCAGCTGAGGAGATTATGATGTGGCTCGGCTAA 936 0.4327 MAMSVENQDPNDIGFFWDNQPWDVSNFDNLGQRETKENLHIEMPPLPPAPINHLTQGEIEKKNEEFTTPVTNNKKRRRADEDGKRPMKNDGNDHDLHIWTERERRKKMRDMFANLHAMLPQLPPKADKSSIVDEAVRHIKTLQQTVENLEKKKRQRIQSLSVSVSPIVCESAVTDPQWNPYDSSSLSRDNNALTITGTQHASNPSFVSAAVANNSPFFKTWASQNVVLNMCGEEAQFSICAEKKPSLFTTIAFVLQKHKVDVISASILCNHNVNRYMVLTHASRALLQFADANTVEETFKRAAEEIMMWLG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01423 311 Pfam Helix-loop-helix DNA-binding domain 100 143 IPR011598 GO:0046983
Adu10g01423 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 161 IPR036638 GO:0046983
Adu10g01423 311 SMART finulus 100 148 IPR011598 GO:0046983
Adu10g01423 311 Gene3D - 92 163 IPR036638 GO:0046983
Adu10g01423 311 PANTHER - 11 309 IPR044278 GO:0003700|GO:0006355|GO:0009960
Adu10g01423 311 Coils Coil 132 159 - -
Adu10g01423 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 142 IPR011598 GO:0046983
Adu10g01423 311 MobiDBLite consensus disorder prediction 58 94 - -
Adu10g01423 311 CDD bHLH_AtbHLH_like 97 150 IPR045239 -
Adu10g01423 311 PANTHER TRANSCRIPTION FACTOR BHLH95 11 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01423 Adu-Chr10 54129430 54133635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01423 22 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.528 3.18e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu10g01423 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01423 - - adu:107469983 635.95