Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01327 ATGCGTCCGTCGCAGCCCCGCCGCCTTCCACCCAAGGCCGCCTCTCTCGACCCCAAAATCTGGCGTGCATGCGCCGGAGCATCCGTTCACATCCCCGCCGTGCATTCTAGGGTTTACTACTTTCCGCAGGGCCATCTTGAACAAGCCTTCCCCCCTTCCCTTCACAACAACCACCACAACCATCACCTGAACCCTCTCATTCGCACACTCCCGTTCGTCCTTTGCCGCGTCTCTTCCGTTCAATTCCTCGCCGATCCCCTCTCCGACGAGGTATTCGCTAAGCTCCTGCTAAGTCCCATAGCCGCCGACGATCGTTCCTCCTCAACCAGCGAGGATCGACTCGACTTCAACGCCGACCCGCCGGTACAGGTTCTCTCCGTCACCGACGTTCACGGCGCCACCTGGGACTTTCGTCACATTTACCGTGGAACCCCCCGGCGGCACCTCCTGACAACCGGTTGGAGCAAGTTCGTGAACCACAAGAAGCTCGTCGCCGGTGACTCCGTCGTGTTTTTGAAAAACTCCCAGGGCTCCTTGTTCGTCGGCATTAGGCGTACCTTGCGATTCTCTGCCGTGCTGAAGGAGGATCGAGACCCGTGGCTGGAGGAAGAGGAGGAAGAGGATAACAGCAGTGATCCTCCGGTGTTTACGAGGGACGGGAGGGGGAAGGTGACGTTGAAGGCGGTTGCAGAGGCTGCGGAATTGGCGGCGAGGACCATGCCGTTCGAGGTAGTATATTATCCAAGGGCTGGGTGGTCGGATTTCGTGGTGAAGGCTGAGGCTGTTGAGGCAGCAATGAAGGCGGGTTGGTGTCCTGGAATGAGAGTGAAAATGGCTGTGGAGACTGAGGATGCTTCTAGAATGACCTGGTTTCAGGGGACGGTGTCTTCAGCCTCGGTTCCTGATAATGGGCCTTGGAGGGGTTCTCCTTGGCGTATGCTTCAGGTTACATGGGACGAACCTGAGGTCCTGCAGAATGCAAAGCGAATCAGTCCGTGGCAGGTGGAACTTATTTCCACCACACCTACACTGCATACAGTGTTTCCCCCCACAAAAAAGTTTAGAGCTGGGGCATTAAGTGATTTAGAAGGAGACCCTTACTTCCCTATAGCAGGGTTCACTAACTCAACAATGGAACACCTGAGTCAAACATTGTTGGGTTATAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTCCATCAAGTTTTTCCAACTTTTTAAATGATAACTCTCATCTGCATATGGGTAGCAGTTTCTTTGGGAAGACTACAGAGCCTATGTTAAGTACTGTGTCAACAGAGTTAAACATTGGCAACTGCCAATCTGGCGATCTGTCACCAGATAGCCCAAGTAGTTTGCGTTCATTTGGCCCAGAGTTTACTGGGACCAACAATAGCAACGTCCCGAAAATTGGTTCTGGTTCATTTCTGCTGTTTGGTAAGATCATAAAACCTGTTGAGGTTGAGTTGCATGATGCTGGTTGCATTGCAGATGATGGCTGTAAGAGCAGCACTGAAACTGAATGCATTGACAAGCCAGTGGGTCATTCTTTGACTTACTCAACATTGCTCAGGCTTGATGTAGAAAGCCAACAACCCTCACAAGTTGAGGCATGTTATCTGTGA 1641 0.5229 MRPSQPRRLPPKAASLDPKIWRACAGASVHIPAVHSRVYYFPQGHLEQAFPPSLHNNHHNHHLNPLIRTLPFVLCRVSSVQFLADPLSDEVFAKLLLSPIAADDRSSSTSEDRLDFNADPPVQVLSVTDVHGATWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFLKNSQGSLFVGIRRTLRFSAVLKEDRDPWLEEEEEEDNSSDPPVFTRDGRGKVTLKAVAEAAELAARTMPFEVVYYPRAGWSDFVVKAEAVEAAMKAGWCPGMRVKMAVETEDASRMTWFQGTVSSASVPDNGPWRGSPWRMLQVTWDEPEVLQNAKRISPWQVELISTTPTLHTVFPPTKKFRAGALSDLEGDPYFPIAGFTNSTMEHLSQTLLGYNTFPAGMQGARHDLFSPSSFSNFLNDNSHLHMGSSFFGKTTEPMLSTVSTELNIGNCQSGDLSPDSPSSLRSFGPEFTGTNNSNVPKIGSGSFLLFGKIIKPVEVELHDAGCIADDGCKSSTETECIDKPVGHSLTYSTLLRLDVESQQPSQVEACYL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01327 546 Gene3D - 270 343 - -
Adu10g01327 546 SMART B3_2 92 187 IPR003340 GO:0003677
Adu10g01327 546 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 114 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu10g01327 546 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 104 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu10g01327 546 Pfam Auxin response factor 232 315 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Adu10g01327 546 MobiDBLite consensus disorder prediction 200 219 - -
Adu10g01327 546 SUPERFAMILY DNA-binding pseudobarrel domain 115 185 IPR015300 -
Adu10g01327 546 ProSiteProfiles B3 DNA-binding domain profile. 92 187 IPR003340 GO:0003677
Adu10g01327 546 Pfam B3 DNA binding domain 124 185 IPR003340 GO:0003677
Adu10g01327 546 PANTHER AUXIN RESPONSE FACTOR 114 545 - -
Adu10g01327 546 PANTHER AUXIN RESPONSE FACTOR 12 104 - -
Adu10g01327 546 CDD B3_DNA 123 185 IPR003340 GO:0003677
Adu10g01327 546 Gene3D - 39 187 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01327 Adu-Chr10 36714096 36717925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01327 16 513 B3 DNA Binding Superfamily AT1G77850 43.993 1.51e-147 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu10g01327 Auxin_resp 6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01327 - - aip:107624033 1039.64