Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01278 ATGGACCACCATACGAGTGGCAAGTGTACAAAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGGTAAAGTCTTATTTTCCTTTCCTCATACTAATTATTACTTATGCTCTACTGATTTGGGACGAAAAGAATTTGAAGAGGCTTAAAAGCAGTGGAAAGTTAAAGAAAGTTCTTTGGAGACTAGGAATTTTGGTGGGTTACTTTTTCAAGCTCATGCCAATGCTATCAGAAATGTTATGA 471 0.3864 MDHHTSGKCTKFLVAVMVCLKYITRADIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHHLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQVKSYFPFLILIITYALLIWDEKNLKRLKSSGKLKKVLWRLGILVGYFFKLMPMLSEML 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01278 156 Pfam SNF2-related domain 32 104 IPR000330 GO:0005524|GO:0140658
Adu10g01278 156 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 91 IPR014001 -
Adu10g01278 156 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 23 100 IPR044972 GO:0003677|GO:0016887|GO:0017025
Adu10g01278 156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 114 IPR027417 -
Adu10g01278 156 Gene3D - 2 137 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01278 Adu-Chr10 31580528 31581666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01278 26 88 RAD5 or RAD16-like Gene Family AT5G22750 47.619 1.53e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu10g01278 SNF2_N 1.5e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01278 K15192 - adu:107469552 306.219