LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu10g01131	ATGATGTATATTCTTAGTGATGTCATCAATGCTTATGGAGATAAGAATTCCAAATTGGGTATGCATGATGTGAACAAGTATGCATTGAGGCTTTTATTAGTTGCAATTGGTGTTGGACTTTCAGCTTTTGTAGAAGGAATGTGTTGGGCAAGAACTGCAGAGAGACAGGCTTCAAGAATGAGAATGGAATATTTGAAATCAGTGCTGAGACAAGAAATTGGATTCTTTGATAGCCAGACAGCTGGTACTTCAACAACTTACCAAGTTGTCTCACTCATCTCCTCAGATGCCAATACCATCCAAGTTGCCTTGTGTGAGAAGTGTGAATCAAAAGACTCATCAGAAGATAACATAGAACTGCAAGCAAAGGGTCCAAAGCTAGAGATAGGTTCACCTATTATTTTTACAGAGGCTCCTAAAATGATTAAGACTGCTGCTTCTGTTCCATGTTTTGGGGTTAATTCTGGTTTGGTCAAGCCTGGTGATGTTGGAAGGGGGGACAAATCCGTGGGGGACAAATCCGTGGAGTTAGAGGCTGTTCTCAAAGAAACTGTGAATTTGGAGAACATACCTATTGAGGAGGTTTTTGAGAACCTGAGATGTAGTAGAGAAGGTCTCAGCAGCAAGGCTGCTGAGGAAAGACTCGCCATTTTTGGCCACAACAAGCCTTATTTTACAGATAATGCTGCTGCAGCTCTCATGGCTCGTCTCGCTCCAAAAGCAAAGGTGTGTCAAAAGTACAAGTCTCCTGGGAATGCTTTTGTTGAAGGCGATGCTTCTAGTGCCAGCTACTTCCTCGCAGGTGCAGCTGTTACCGGTGGGACTATCACAGTTGTAGGCTGCGGCACAAGTAGTTTACAGAATCATCCTGCTATTGTTGTGCCTAGGCTTCCTACTGGTTTGAATTTGTTTAGCCTAGTCAGGAGATGTCAAGATTAA	939	0.4302	MMYILSDVINAYGDKNSKLGMHDVNKYALRLLLVAIGVGLSAFVEGMCWARTAERQASRMRMEYLKSVLRQEIGFFDSQTAGTSTTYQVVSLISSDANTIQVALCEKCESKDSSEDNIELQAKGPKLEIGSPIIFTEAPKMIKTAASVPCFGVNSGLVKPGDVGRGDKSVGDKSVELEAVLKETVNLENIPIEEVFENLRCSREGLSSKAAEERLAIFGHNKPYFTDNAAAALMARLAPKAKVCQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVVGCGTSSLQNHPAIVVPRLPTGLNLFSLVRRCQD	312

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu10g01131	312	SUPERFAMILY	ABC transporter transmembrane region	2	104	IPR036640	GO:0005524\|GO:0016021
	Adu10g01131	312	Gene3D	ABC transporter type 1, transmembrane domain	1	112	IPR036640	GO:0005524\|GO:0016021
	Adu10g01131	312	SUPERFAMILY	EPT/RTPC-like	245	290	IPR013792	GO:0003824
	Adu10g01131	312	Gene3D	Enolpyruvate transferase domain	240	297	IPR036968	GO:0016765
	Adu10g01131	312	Pfam	Cation transporter/ATPase, N-terminus	189	222	IPR004014	-
	Adu10g01131	312	PANTHER	ABC TRANSPORTER B FAMILY PROTEIN	1	108	-	-
	Adu10g01131	312	Pfam	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	246	287	IPR001986	GO:0016765
	Adu10g01131	312	Pfam	ABC transporter transmembrane region	2	104	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Adu10g01131	312	Pfam	Protein of unknown function (DUF3148)	129	165	IPR021495	GO:0010258
	Adu10g01131	312	SUPERFAMILY	Calcium ATPase, transmembrane domain M	186	223	IPR023298	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu10g01131	Adu-Chr10	23600970	23604169	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu10g01131	170	222	Primary Pumps ATPases	AT5G62670	77.358	6.21e-21	91.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu10g01131	K05658		-	adu:107469479	210.69

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