Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01129 ATGCGAGCGGCGAGGATGTCACAGGCGAGTATTGTGGGTGCGAGTGCGGCGCGGATTAGAAGGCGGTACGACGAGAGAGAAGCGATGTGTGCGGCGCATTGTGGAGGCGGCGATGCGGCGGTCTGCGCGATGGGAGCCGAGGCACTTCGAAAGCTGCGATGTGGAGATCTCGTGATCGATGAGAGAGATGGAGACGTTCAGAGGAGGTTACTGAGCAaaggattagatgACCCAACATGGTCCTGCTCCTCGCTCTGCTTCGCCCTCTTCCACCTCCATTGTATCCAATCATGGGCCCGCCAAGCCTCCAATCTCGCTGCCGCACGCGCCGCCACGCGCCTCCCTATCACAGAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATCACGCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGCGGTGAGATTTGTGGGAGGCCATTGAAGCACAACTGTGGTCACCATTGCCTTCTTTTATGCCACCCTGGACCCTGCCCGTCCTGCCCAAAACTCGTGAAAGTTAGTTGCTTTTGTACCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAGTTCTCGTGTGGGAAAGTTTGTGGGAAGCTTCTGGATTGTGGGGTTCATGGTTGTGCTGAGATTTGTCATGAGGGTCAATGCCCTCCCTGCCGGGCACGCAGTGTGTACCAGTGCCGGTGTGGTAAGAAGAAGGAAGAGAGGGAGTGCTGTAACCGTGTTTTCGGGTGTGGCGAGCCTTGTGAGAAGAGGCTCGGATGTGGGAGGCATGTGTGTGAGAGAGGTTGCCATGTTGGGGAGTGTGGAGACTGCCCTTTGCAAGGGAAGAGGGCATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTACTGTGCCCTTATGTGGGGCTACTTGTGATAAGATGCTTAGTTGTAGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGTGCATGTGTTGAGACTTGTAGGACTGTTGTGAAGAAGTCTTGTCGATGCGGCAGCCTCAGGAAAGATGTTCCTTGCTATCAAGATTTGTGGTGTGAAAGGAAGTGCCAGAGGATGCGGGACTGTGGCCGGCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCATGCTCAGAGGTCTGTGACAGGCGGCTTAGATGTAAAAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCCTGTGCTCCTTGCCCAATAATGGTCACCATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCATGCCCTATTGCTCCTTTATGCCATCATGCACCAAAGCTCAAGCCACACAAATGCCATTATGGAGCCTGTCCTCCTTGTCGGCTCCCTTGTGCAGAAGAGTACTCTTGTGGCCATGCTTGCAAATTAAGGTGTCATGATGCTAAACCTCCGCCTAATCGGGAGTTCACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAATGTACACCTGGTACTCCATGCCCTCCTTGCCCTGAACTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAACGGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGAAAACTTATGTGGAAATCCTCTACCGTGCGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAATCCGGCCTCCACGAACCGGCTACAGAAAAGTGAGCCTTGTGAAGATTGTTCTCTTCCTTGTGATAAGGAAAGAGAACCTAAATGTCAGCATTGTTGCCCTCGTCGATGCCATCCTGGAGACTGTCCTCCATGCAAAGCGCTGATCAAGCGGTCTTGTCATTGTGGCTCAATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCAGCTAAGGATCAAGAGAAAGTCCGTTCATGTGGTGGGCTGTGTCATAGGAAGTTAGCAAATTGTACCCATCTATGCCCCGAGACGTGCCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCATCGTTCGTTGCAAATGCCAAACACTGAAAAGGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCACAGTGCTGGTTCCCACCCAAAGGATATTACCAAAAATCAATTTGGAATTGGCCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGTCGGAATTACATCTACGTAAATCTCAAGTTACAGAGGTAAAAGAGACAGATAATGAAAAACTGGCTCCGAAGCGACGAAAAAGGCAGAAACGAGTCCAAGAATCTAAGGAAGCAACAAAAATACAGAAAATTATTTCTACAACAAAGAAGCTCCTTCTGTACCTTTTTATTTTGATCGTACTTGTTACTGCTACATATTATGGATACAAGGGACTTCTGTGGCTCAATGATTGGATGAATGAAGTTGATGAACGAAGACAAAGACATCCTAGGATCAGATGA 2589 0.4913 MRAARMSQASIVGASAARIRRRYDEREAMCAAHCGGGDAAVCAMGAEALRKLRCGDLVIDERDGDVQRRLLSKGLDDPTWSCSSLCFALFHLHCIQSWARQASNLAAARAATRLPITEQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVSCFCTKIEDVRRCGFKEFSCGKVCGKLLDCGVHGCAEICHEGQCPPCRARSVYQCRCGKKKEERECCNRVFGCGEPCEKRLGCGRHVCERGCHVGECGDCPLQGKRACPCGKRVYEGMPCDVTVPLCGATCDKMLSCRYHRCPERCHRGACVETCRTVVKKSCRCGSLRKDVPCYQDLWCERKCQRMRDCGRHACKRKCCDGDCPPCSEVCDRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCHHAPKLKPHKCHYGACPPCRLPCAEEYSCGHACKLRCHDAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGTERMMVCSDKSQFACENLCGNPLPCGNHYCTKTCHALENPASTNRLQKSEPCEDCSLPCDKEREPKCQHCCPRRCHPGDCPPCKALIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLANCTHLCPETCHPGECPNPEKCSKKVIVRCKCQTLKREWPCHDVQAAYHSAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVESELHLRKSQVTEVKETDNEKLAPKRRKRQKRVQESKEATKIQKIISTTKKLLLYLFILIVLVTATYYGYKGLLWLNDWMNEVDERRQRHPRIR 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01129 862 CDD NF-X1-zinc-finger 327 376 - -
Adu10g01129 862 CDD NF-X1-zinc-finger 615 656 - -
Adu10g01129 862 CDD NF-X1-zinc-finger 220 266 - -
Adu10g01129 862 MobiDBLite consensus disorder prediction 783 803 - -
Adu10g01129 862 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 76 857 - -
Adu10g01129 862 CDD NF-X1-zinc-finger 273 320 - -
Adu10g01129 862 CDD NF-X1-zinc-finger 380 428 - -
Adu10g01129 862 Pfam NF-X1 type zinc finger 484 494 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 178 195 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 390 408 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 230 248 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 503 513 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 417 435 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 691 709 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 628 644 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 585 595 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 283 301 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 Pfam NF-X1 type zinc finger 339 356 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 76 857 IPR034078 GO:0003700
Adu10g01129 862 CDD NF-X1-zinc-finger 166 214 - -
Adu10g01129 862 CDD NF-X1-zinc-finger 407 455 - -
Adu10g01129 862 SMART znfxneu3 337 357 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 390 409 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 230 249 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 417 436 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 690 711 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 283 302 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 585 617 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 503 548 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 178 196 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 627 645 IPR000967 GO:0005634|GO:0008270
Adu10g01129 862 SMART znfxneu3 474 495 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01129 Adu-Chr10 23545783 23555049 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Adu10g01129 zf-NF-X1 1.5e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01129 K15683 - gmx:100799540 1405.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g01129 10 23545783 23555049 Adu10g01129 10 23545783 23555049 ECH