Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01054 ATGGAATTCGAACTCCCAAACAAGGCCTTAACCACCACGCGCTTTTCGGAGCTGAATCCGCCGCTATCAGAGAAGGTTCTCGAAGCTTTATCGGAATCCGGGTTCAACTTCTGCACGCCGGTTCAAGCCGCCACCATTCCCTTGCTCTGCAGCTTCAAGGATGTCGCCGTCGACGCCGCCACTGGTTCAGGCAAAACCCTAGCTTTTGTCGTCCCTCTCGTCGAGATTCTTCGACGCTCCTCTTCTAACCCCAAGCCTCATCAGGTACTAGGAATAATCATATCCCCCACAAGGGAGCTATCACATCAAATATATCATGTAGCACAACCTTTCATTTCAACTTTAGCGAATGTTAAGTCCATGCTGCTTGTTGGTGGAGTTGAAGTGAAATCAGACATGAAGAAGATAGAGGAAGAAGGCGCTAACATACTAATTGGCACACCTGGGCGGTTGTATGACATAATGAACCGGATGGATTTCTTGGATTTCAAAAACTTCGAGATTTTGATTTTAGACGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCCATTATATCTCTTTTGCCTAAGCTTCGAAGAACTGGCCTGTTTTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTGCTAGAGCAGGATTGAGAAATCCTGTGAGGGTTGAAGTTCGGGCAGAGGCGAAACTTTTAAATGCTCCTGCAGCATCAAAACAACCTGAATCTACAAAAACACCTTCTGGGCTTCAAATTGAGTACTTGGAATGTGAGGCAGATAAGAAGCCATCACAGCTAGTAGACATCCTTATTAAGAACCGCTCAAGAAAAGTTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTCCTTCCACGCCTCTCTGTTTTGAAAGGCTTCTCCTTGGTTCCTCTTCATGGAAAAATGAAGCAGACTGTTAGGGAGAAAGCATTAGCCTCCTTTACATCCCTTTCAAATGGAGTTCTGCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACACAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTGCCAAAGGAGGAGTCTTACGTAGAATTCCTACGTATAAGAAGGGTCCCTCTTCAAGAGAGAAAATTCTCTGATGATGCACCTGATGTTGTACCTCAGATTCGTTCTGCTGCGAAAAAAGATCGTGATGTTATGGAGAAAGGAGTCAGGGCATTTGTTTCCTACATCCGTGCATACAAGGAGCATCACTGTTCATATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCCATGGGACATGGCTTACTGCAACTTCCTCTAATGCCAGAGGTAAAACATCATTCACTTTCTACCGAGGGATTTGTACCGGTTGATGATATCAATTTGGAGGACATTAAATACAGAGATAAATCTCGTGAAAAACAAAGGAAGAAAAACCTGCAAGCAAAGAAAGAAGCAAAAGAGAAGGAGAAAGAGGCAAAACCAGAAAAGCCAAGCAAAACTCCCAGTGCACCTACTGCCATGAGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAGTTGATGCAAGATTACCGCTTGTTGAAGAAACTGAAGAAAGGGACTATAGATGAGAATGAATATGCTAAGTTGACAGGCGCTGAGGAATTACTCTGA 1776 0.4364 MEFELPNKALTTTRFSELNPPLSEKVLEALSESGFNFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSNPKPHQVLGIIISPTRELSHQIYHVAQPFISTLANVKSMLLVGGVEVKSDMKKIEEEGANILIGTPGRLYDIMNRMDFLDFKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELARAGLRNPVRVEVRAEAKLLNAPAASKQPESTKTPSGLQIEYLECEADKKPSQLVDILIKNRSRKVIIYFMTCACVDYWGVVLPRLSVLKGFSLVPLHGKMKQTVREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERKFSDDAPDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGHGLLQLPLMPEVKHHSLSTEGFVPVDDINLEDIKYRDKSREKQRKKNLQAKKEAKEKEKEAKPEKPSKTPSAPTAMRKKTARQRRAQQTIEDEEELMQDYRLLKKLKKGTIDENEYAKLTGAEELL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01054 591 Coils Coil 503 525 - -
Adu10g01054 591 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Adu10g01054 591 CDD SF2_C_DEAD 251 384 - -
Adu10g01054 591 SMART ultradead3 34 254 IPR014001 -
Adu10g01054 591 MobiDBLite consensus disorder prediction 502 531 - -
Adu10g01054 591 SMART DUF4217_3 413 476 IPR025313 -
Adu10g01054 591 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Adu10g01054 591 Coils Coil 541 568 - -
Adu10g01054 591 Pfam Domain of unknown function (DUF4217) 416 473 IPR025313 -
Adu10g01054 591 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 23 588 - -
Adu10g01054 591 CDD DEADc_DDX55 26 224 - -
Adu10g01054 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Adu10g01054 591 MobiDBLite consensus disorder prediction 502 559 - -
Adu10g01054 591 Gene3D - 4 227 IPR027417 -
Adu10g01054 591 Gene3D - 252 479 IPR027417 -
Adu10g01054 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Adu10g01054 591 PANTHER RNA HELICASE 23 588 - -
Adu10g01054 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Adu10g01054 591 SMART helicmild6 290 375 IPR001650 -
Adu10g01054 591 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Adu10g01054 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01054 Adu-Chr10 19131904 19135904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01054 22 389 Eukaryotic Initiation Factors Gene Family AT3G13920 30.623 3.23e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01054 K14809 - gmx:100801482 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g01054 10 19131904 19135904 Adu10g01054 10 19131904 19135904 ECH