Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu10g01047 | ATGCCACAAAGGAAAAAGCCTATACATCAATGGAAGCATCCAATCCATGCTTATTATCCTTTTGAAGGATTTTTGTTTGGATCATGGCAACCAGTGGAGCATATGAAAATAGAGTCAGGAACTATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGCCTGGAGTTGATATATGTGTTCTTTCAACCCCACAATGCACTGCTAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGATTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAGCAAGGAAGTTAAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTAGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTCCCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGACGGCATGTACAACCGGACCGGTACCTTGGTTGCGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACTTGGCCTCCCAAGATGAGTGTATCGAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTCTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAGCCGTTATAATCTCAGGAACAAGCAAAACACGCAAGAAACCGGGAACGAAGAAAAAGTGGAAGAACTTTCTTCAAGAATCTATAGCGGTTATGGCGCCGCAAAGTTACACAAGAAGAAATCAGTTGATCTAGATGATATAGACATCGAACTTGGATGGGAAGGTTTAAGTTCGAAAAGAAGAGTTCAAGAGAAAAGAAACCACCATTCAAGTTCAACAACATATTCAAAAAGTAGTAGGAATCTTGATGATGAAGAAAGATCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGCTTCTAATATTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGCAAAATCTCAAGTGGAGAAAGAAGAAATTTCTGAAACGGCTATGTTATGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGTTGAAGAAACAAAGGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTACAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGCGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTTTGCCACAGAAAACAAGGCACAGGCAAGAGGAGAATCAGCGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACTCCAGCGACTCCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGCATGAAGAAAATGGCAATGTGTGGGAACTAGTTCCAGATTTGAAAGCAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCCGGAAAAACCTTCCTCATAATCGCGTTTCTCGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCATTGATTCTTGCTCCAAAAACTACACTCTACACATGGTACAAGGAGTTCCTCAAATGGGAGATTTCTTTACCGATTTATATCATCCATGGCCGCTCGTCGCAGAAGCAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGAGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGCCCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGCAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCTAAGTTTGTTCACGAAGCTTTATCAGAGTTGGATGGTAAATACCGGACGAATCAAAAGATTGCCGAGAAAGCAAAACATTTGCTCGAGTCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCAAGCGATGACGAAGACACGGAGCAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTCGGCAACTCTAATATTACTATGCCTTGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGCTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCGTGGCTGGTGAAAACGGTGGAGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGTCACAACATTGCACCAGTGAAGTTGCTTGTGGAATTGTTTGAGAGAGTTTTTAGTTGGAGAAAAGACAGAGAGATATTGGTACTCAACGGGGAACTTGAATTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCAGCGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCGGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCAATGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCA | 3774 | 0.4099 | MPQRKKPIHQWKHPIHAYYPFEGFLFGSWQPVEHMKIESGTMIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRPGVDICVLSTPQCTANNNDPVWIDGRINSIKRNPHDSDCSCQYYVNFYLNQGSFGTQRTLSKEVKVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYSPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPILVLPPPKKDEPIPLPQSRYNLRNKQNTQETGNEEKVEELSSRIYSGYGAAKLHKKKSVDLDDIDIELGWEGLSSKRRVQEKRNHHSSSTTYSKSSRNLDDEERSYKDRTLNAVSYKEVIDSYLRQIEEASNIEKEQPSIREQWMATTRECEQKNEMAKSQVEKEEISETAMLWREMEMSMASSHLVEETKDSSSDAVLAETTGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFLPQKTRHRQEENQRSDSEKLEAEEDSSDSKFFSTVDASRDEPMHEENGNVWELVPDLKAKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFLKWEISLPIYIIHGRSSQKQFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMSYTSFLSHMREDSRFSHGKYMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKAKHLLESRARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPCLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVECVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFSWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACSEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFNEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYS | 1258 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu10g01047 | 1258 | Gene3D | - | 1017 | 1257 | IPR027417 | - | |
Adu10g01047 | 1258 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 849 | 1219 | IPR027417 | - | |
Adu10g01047 | 1258 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1066 | 1221 | IPR001650 | - | |
Adu10g01047 | 1258 | Pfam | Helicase conserved C-terminal domain | 1063 | 1179 | IPR001650 | - | |
Adu10g01047 | 1258 | MobiDBLite | consensus disorder prediction | 455 | 482 | - | - | |
Adu10g01047 | 1258 | MobiDBLite | consensus disorder prediction | 364 | 416 | - | - | |
Adu10g01047 | 1258 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 | 20 | 1256 | - | - | |
Adu10g01047 | 1258 | CDD | SF2_C_SNF | 1062 | 1191 | - | - | |
Adu10g01047 | 1258 | SMART | helicmild6 | 1095 | 1180 | IPR001650 | - | |
Adu10g01047 | 1258 | MobiDBLite | consensus disorder prediction | 623 | 650 | - | - | |
Adu10g01047 | 1258 | SMART | ultradead3 | 676 | 918 | IPR014001 | - | |
Adu10g01047 | 1258 | Pfam | SNF2-related domain | 680 | 933 | IPR000330 | GO:0005524|GO:0140658 | |
Adu10g01047 | 1258 | Gene3D | - | 651 | 947 | IPR038718 | - | |
Adu10g01047 | 1258 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 705 | 904 | IPR014001 | - | |
Adu10g01047 | 1258 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED | 20 | 1256 | IPR044567 | GO:0080188 | |
Adu10g01047 | 1258 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 666 | 906 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu10g01047 | Adu-Chr10 | 18889928 | 18895526 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu10g01047 | 1051 | 1218 | RAD5 or RAD16-like Gene Family | AT5G43530 | 31.395 | 4.44e-12 | 68.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Adu10g01047 | SNF2_N | 5.5e-19 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu10g01047 | K10875 | - | gmx:100811703 | 1376.69 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Adu10g01047 | 10 | 18889928 | 18895526 | Adu10g01047 | 10 | 18889928 | 18895526 | ECH | |
Adu10g01047 | 10 | 18889928 | 18895526 | Adu07g00739 | 07 | 8626591 | 8631563 | PCT |