LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu10g01047	ATGCCACAAAGGAAAAAGCCTATACATCAATGGAAGCATCCAATCCATGCTTATTATCCTTTTGAAGGATTTTTGTTTGGATCATGGCAACCAGTGGAGCATATGAAAATAGAGTCAGGAACTATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGCCTGGAGTTGATATATGTGTTCTTTCAACCCCACAATGCACTGCTAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGATTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAGCAAGGAAGTTAAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTAGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTCCCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGACGGCATGTACAACCGGACCGGTACCTTGGTTGCGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACTTGGCCTCCCAAGATGAGTGTATCGAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTCTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAGCCGTTATAATCTCAGGAACAAGCAAAACACGCAAGAAACCGGGAACGAAGAAAAAGTGGAAGAACTTTCTTCAAGAATCTATAGCGGTTATGGCGCCGCAAAGTTACACAAGAAGAAATCAGTTGATCTAGATGATATAGACATCGAACTTGGATGGGAAGGTTTAAGTTCGAAAAGAAGAGTTCAAGAGAAAAGAAACCACCATTCAAGTTCAACAACATATTCAAAAAGTAGTAGGAATCTTGATGATGAAGAAAGATCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGCTTCTAATATTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGCAAAATCTCAAGTGGAGAAAGAAGAAATTTCTGAAACGGCTATGTTATGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGTTGAAGAAACAAAGGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTACAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGCGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTTTGCCACAGAAAACAAGGCACAGGCAAGAGGAGAATCAGCGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACTCCAGCGACTCCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGCATGAAGAAAATGGCAATGTGTGGGAACTAGTTCCAGATTTGAAAGCAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCCGGAAAAACCTTCCTCATAATCGCGTTTCTCGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCATTGATTCTTGCTCCAAAAACTACACTCTACACATGGTACAAGGAGTTCCTCAAATGGGAGATTTCTTTACCGATTTATATCATCCATGGCCGCTCGTCGCAGAAGCAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGAGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGCCCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGCAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCTAAGTTTGTTCACGAAGCTTTATCAGAGTTGGATGGTAAATACCGGACGAATCAAAAGATTGCCGAGAAAGCAAAACATTTGCTCGAGTCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCAAGCGATGACGAAGACACGGAGCAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTCGGCAACTCTAATATTACTATGCCTTGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGCTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCGTGGCTGGTGAAAACGGTGGAGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGTCACAACATTGCACCAGTGAAGTTGCTTGTGGAATTGTTTGAGAGAGTTTTTAGTTGGAGAAAAGACAGAGAGATATTGGTACTCAACGGGGAACTTGAATTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCAGCGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCGGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCAATGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCA	3774	0.4099	MPQRKKPIHQWKHPIHAYYPFEGFLFGSWQPVEHMKIESGTMIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRPGVDICVLSTPQCTANNNDPVWIDGRINSIKRNPHDSDCSCQYYVNFYLNQGSFGTQRTLSKEVKVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYSPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPILVLPPPKKDEPIPLPQSRYNLRNKQNTQETGNEEKVEELSSRIYSGYGAAKLHKKKSVDLDDIDIELGWEGLSSKRRVQEKRNHHSSSTTYSKSSRNLDDEERSYKDRTLNAVSYKEVIDSYLRQIEEASNIEKEQPSIREQWMATTRECEQKNEMAKSQVEKEEISETAMLWREMEMSMASSHLVEETKDSSSDAVLAETTGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFLPQKTRHRQEENQRSDSEKLEAEEDSSDSKFFSTVDASRDEPMHEENGNVWELVPDLKAKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFLKWEISLPIYIIHGRSSQKQFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMSYTSFLSHMREDSRFSHGKYMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKAKHLLESRARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPCLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVECVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFSWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACSEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFNEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYS	1258

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu10g01047	1258	Gene3D	-	1017	1257	IPR027417	-
	Adu10g01047	1258	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	849	1219	IPR027417	-
	Adu10g01047	1258	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1066	1221	IPR001650	-
	Adu10g01047	1258	Pfam	Helicase conserved C-terminal domain	1063	1179	IPR001650	-
	Adu10g01047	1258	MobiDBLite	consensus disorder prediction	455	482	-	-
	Adu10g01047	1258	MobiDBLite	consensus disorder prediction	364	416	-	-
	Adu10g01047	1258	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2	20	1256	-	-
	Adu10g01047	1258	CDD	SF2_C_SNF	1062	1191	-	-
	Adu10g01047	1258	SMART	helicmild6	1095	1180	IPR001650	-
	Adu10g01047	1258	MobiDBLite	consensus disorder prediction	623	650	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu10g01047	Adu-Chr10	18889928	18895526	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu10g01047	1051	1218	RAD5 or RAD16-like Gene Family	AT5G43530	31.395	4.44e-12	68.9

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Adu10g01047		SNF2_N	5.5e-19	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu10g01047	K10875		-	gmx:100811703	1376.69

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu10g01047	10	18889928	18895526	Adu10g01047	10	18889928	18895526	ECH
	Adu10g01047	10	18889928	18895526	Adu07g00739	07	8626591	8631563	PCT

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